|
Status |
Public on Sep 29, 2018 |
Title |
Psoaje_WT_rep3 |
Sample type |
SRA |
|
|
Source name |
mycelium
|
Organism |
Phytophthora sojae |
Characteristics |
genotype: wild type strain: P6497 tissue: mycelium age: 3-day
|
Growth protocol |
V8 medium
|
Extracted molecule |
polyA RNA |
Extraction protocol |
RNA were extracted using OMEGA total RNA Kit I (Cat.#:R6834-04) Library followed the standard Illumina protocol
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 4000 |
|
|
Data processing |
Clean reads were aligned to Psojae v1.1 and Pinfestans whole genome using hisat2 v2.1.0 with default parameters FPKM were calculated using stringtie v1.3.3b with default parameters Genome_build: Psojae v1.1 and ASM14294v1 Supplementary_files_format_and_content: gtf files include FPKM,TPM,and coverage values for each Sample …
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|
|
Submission date |
Jun 20, 2018 |
Last update date |
Sep 30, 2018 |
Contact name |
Haidong Shu |
E-mail(s) |
2018202004@njau.edu.cn
|
Organization name |
Nanjing Agricultural University
|
Department |
Department of Plant Pathology
|
Lab |
The Lab of Pathogenomics
|
Street address |
Weigang NO.1
|
City |
Nanjing |
State/province |
Jiangsu |
ZIP/Postal code |
210095 |
Country |
China |
|
|
Platform ID |
GPL25217 |
Series (1) |
GSE116090 |
Transcriptomes of two phytophthora species at mycelium stage |
|
Relations |
BioSample |
SAMN09462929 |
SRA |
SRX4277321 |