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Sample GSM323527 Query DataSets for GSM323527
Status Public on Sep 25, 2008
Title JPA281
Sample type RNA
 
Source name JPA281
Organism Homo sapiens
Characteristics Juvenile pilocytic astrocytoma
Age: 9 Sex: F
Location: cerebellum
Histopathology: highly vascular with vascular proliferation noted
Extracted molecule total RNA
Extraction protocol Trizol followed by RNeasy was performed according to the manufacturer's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix)
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400
Scan protocol GeneChips were scanned using GeneArray Scanner Model G2500
Description Gene expression from juvenile pilocytic astrocytoma
Data processing The data were analyzed using GCOS1.4
 
Submission date Sep 23, 2008
Last update date Sep 26, 2008
Contact name Kwong-Kwok Wong
E-mail(s) kkwong@mdanderson.org
Phone 713-792-0229
Organization name UT M. D. Anderson Cancer Center
Department Gynecologic Oncology and Reproductive Medicine
Street address T4-3900, 1515 Holcombe Boulevard
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platform ID GPL96
Series (1)
GSE12907 Expression Analysis of Juvenile Pilocytic Astrocytomas by Oligonucleotide Microarray Reveals Two Potential Subgroups

Data table header descriptions
ID_REF
VALUE dChip normalization

Data table
ID_REF VALUE
1007_s_at 3535.99
1053_at 241.93
117_at 315.74
121_at 1381.33
1255_g_at 59.86
1294_at 435.37
1316_at 197.32
1320_at 219.65
1405_i_at 162.45
1431_at 70.9
1438_at 181.94
1487_at 295.5
1494_f_at 369.74
1598_g_at 927.45
160020_at 2907.51
1729_at 391.31
1773_at 257.81
177_at 223.3
179_at 1027.6
1861_at 168.44

Total number of rows: 22215

Table truncated, full table size 385 Kbytes.




Supplementary file Size Download File type/resource
GSM323527.CEL.gz 3.5 Mb (ftp)(http) CEL
GSM323527.CHP.gz 119.1 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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