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Sample GSM3248 Query DataSets for GSM3248
Status Public on Apr 02, 2003
Title somatic embryos 21_14_1
Sample type RNA
 
Channel 1
Source name 21 d adaxial
Organism Glycine max
Extracted molecule total RNA
 
Channel 2
Source name 14 d adaxial
Organism Glycine max
Extracted molecule total RNA
 
 
Description Comparison of adaxial sides of cotyledons after 14 and 21 days on 40mg/L 2,4-D (replicate 1).
Scanned with ScanArray Express 1.0.
Quantitated with GenePix 3.0.
Keywords = somatic embryogenesis
Lot batch = 0013_B06
 
Submission date Dec 20, 2002
Last update date May 27, 2005
Contact name Lila O. Vodkin
E-mail(s) l-vodkin@illinois.edu
Phone 217-244-6147
Organization name University of Illinois
Department Crop Sciences
Lab Lila Vodkin
Street address 1201 W. Gregory Dr.
City Urbana
State/province IL
ZIP/Postal code 61801
Country USA
 
Platform ID GPL229
Series (1)
GSE136 Somatic embryogenesis

Data table header descriptions
ID_REF
F_Pixels number of pixels in the spot
B_Pixels number of pixels in the background
F635Mean number of pixels in the background
F635SD standard deviation around channel 2 mean spot intensity
B635Median channel 2 median background intensity
B635SD standard deviation around channel 2 mean background intensity
F532Mean channel 1 mean spot intensity
F532SD standard deviation around channel 1 mean spot intensity
B532Median channel 1 median background intensity
B532SD standard deviation around channel 1 mean background intensity
S635N channel 2 normalized and background-corrected spot signal
S532N channel 1 normalized and background-corrected spot signal
VALUE log ratio of PRE_VALUE
Flags user defined flags (default = 0)
PRE_VALUE S532N/S635N

Data table
ID_REF F_Pixels B_Pixels F635Mean F635SD B635Median B635SD F532Mean F532SD B532Median B532SD S635N S532N VALUE Flags PRE_VALUE
1 156 979 22048 11349 2764 1281 35430 16944 669 752 19347 39197 0.3066393 0 2.025998863
2 156 888 22437 12196 2800 1337 34129 16964 632 713 19701 37772 0.2826823 0 1.917263083
3 316 1537 2979 1373 2724 1311 856 976 650 632 254 231 -0.0412223 5 0.909448819
4 316 1492 2857 1271 2787 1315 717 604 671 640 70 50 -0.1461283 5 0.714285714
5 156 852 13130 4349 2768 1355 5882 2522 664 604 10396 5883 -0.2472673 0 0.565890727
6 156 1031 11869 4260 2773 1349 5586 2504 649 704 9125 5566 -0.2146903 0 0.609972603
7 156 926 15899 5493 2741 1269 5811 2001 666 629 13201 5801 -0.3571043 0 0.439436406
8 156 974 15886 5680 2782 2187 5835 2101 650 1833 13147 5846 -0.3519683 0 0.444664182
9 156 1045 7388 2983 2751 1233 2862 1460 594 583 4651 2557 -0.2598163 0 0.549774242
10 156 1008 7793 2949 2771 1203 2761 1475 616 627 5037 2418 -0.3187163 0 0.480047647
11 156 1012 24888 13668 2662 1262 7157 3811 634 584 22300 7355 -0.4817223 0 0.329820628
12 156 1008 24183 12446 2683 2168 7175 4232 623 2367 21570 7387 -0.4653823 0 0.342466389
13 156 946 17211 9027 2879 2223 5352 3356 647 2445 14378 5304 -0.4330953 0 0.368896926
14 156 879 19078 9396 2608 1305 6179 3344 675 661 16524 6206 -0.4253033 0 0.375574921
15 316 1552 2957 1232 2614 1371 872 623 650 628 343 249 -0.1390953 5 0.725947522
16 316 1784 3077 1382 2710 1322 905 901 622 586 367 318 -0.0622393 5 0.866485014
17 80 614 3706 1307 2763 1234 1999 965 664 629 945 1505 0.2021053 100 1.592592593
18 120 782 8889 3441 2773 1513 6474 2634 606 1889 6135 6617 0.0328473 0 1.078565607
19 120 688 20817 6262 2678 1302 14558 3649 617 533 18198 15720 -0.0635713 0 0.86383119
20 120 681 10070 3455 2730 1331 8916 2238 624 575 7364 9350 0.1036983 0 1.269690386

Total number of rows: 9728

Table truncated, full table size 837 Kbytes.




Supplementary data files not provided
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