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Sample GSM3251 Query DataSets for GSM3251
Status Public on Apr 02, 2003
Title somatic embryos 28_21_2
Sample type RNA
 
Channel 1
Source name 28 d adaxial
Organism Glycine max
Extracted molecule total RNA
 
Channel 2
Source name 21 d adaxial
Organism Glycine max
Extracted molecule total RNA
 
 
Description Comparison of adaxial sides of cotyledons
after 21 and 28 days on 40mg/L 2,4-D
(replicate 2).
Scanned with ScanArray Express 1.0
Quantitated with GenePix 3.0

Keywords = somatic embryogenesis
Lot batch = 0013_C01
 
Submission date Dec 20, 2002
Last update date May 27, 2005
Contact name Lila O. Vodkin
E-mail(s) l-vodkin@illinois.edu
Phone 217-244-6147
Organization name University of Illinois
Department Crop Sciences
Lab Lila Vodkin
Street address 1201 W. Gregory Dr.
City Urbana
State/province IL
ZIP/Postal code 61801
Country USA
 
Platform ID GPL229
Series (1)
GSE136 Somatic embryogenesis

Data table header descriptions
ID_REF
F_Pixels number of pixels in the spot
B_Pixels number of pixels in the background
F635Mean channel 2 mean spot intensity
F635SD standard deviation around channel 2 mean spot intensity
B635Median channel 2 median background intensity
B635SD standard deviation around channel 2 mean background intensity
F532Mean channel 1 mean spot intensity
F532SD standard deviation around channel 1 mean spot intensity
B532Median channel 1 median background intensity
B532SD standard deviation around channel 1 mean background intensity
S635N channel 2 normalized and background-corrected spot signal
S532N channel 1 normalized and background-corrected spot signal
VALUE log ratio of PRE_VALUE
Flags user-defined flags (default = 0)
PRE_VALUE S532N/S635N

Data table
ID_REF F_Pixels B_Pixels F635Mean F635SD B635Median B635SD F532Mean F532SD B532Median B532SD S635N S532N VALUE Flags PRE_VALUE
1 156 965 35414 15847 1494 674 26062 13493 971 1016 26345 23898 -0.0423373 0 0.9071171
2 156 1027 34673 16195 1487 668 24299 14662 957 1024 25775 22232 -0.0642203 0 0.862541222
3 120 815 14443 4007 1436 849 5213 2118 869 989 10102 4137 -0.3877223 0 0.409522867
4 120 838 12489 4739 1439 855 3888 1930 895 920 8582 2850 -0.4787443 0 0.332090422
5 156 975 7958 3440 1364 647 5651 3287 785 847 5121 4634 -0.0433993 0 0.904901386
6 156 945 8008 2924 1375 687 5500 3451 797 903 5151 4479 -0.0607103 0 0.869539895
7 156 928 6650 3596 1378 647 2912 2269 847 1087 4094 1966 -0.3185643 0 0.480214949
8 156 933 6978 3881 1414 669 2659 2111 867 950 4321 1706 -0.4036053 0 0.394816015
9 120 794 3074 1395 1386 830 1606 1112 854 1389 1310 715 -0.2629653 100 0.545801527
10 156 1049 3736 1693 1385 721 1762 1292 845 1001 1825 872 -0.3207463 0 0.477808219
11 156 1008 9403 5240 1394 785 3169 2058 891 1002 6220 2169 -0.4575313 0 0.348713826
12 156 987 11664 8272 1361 695 3507 2582 827 949 8001 2551 -0.4964343 0 0.318835146
13 156 1021 6891 3935 1338 686 2279 1676 832 944 4312 1377 -0.4957453 0 0.319341373
14 156 934 7987 4271 1345 644 2596 1853 866 949 5158 1647 -0.4957883 0 0.31930981
15 316 1539 1422 626 1354 656 951 873 796 853 52 147 0.4513143 5 2.826923077
16 316 1774 1489 699 1318 683 1070 931 816 915 132 241 0.2614433 5 1.825757576
17 120 723 3301 1076 1437 697 2694 1830 819 1048 1447 1785 0.0911703 0 1.233586731
18 120 800 10625 4429 1445 818 8320 4386 938 1110 7129 7031 -0.0060123 0 0.986253331
19 120 816 27128 4769 1377 691 17637 4785 902 932 20000 15939 -0.0985693 0 0.79695
20 120 805 13593 3415 1443 709 9921 3827 925 930 9436 8568 -0.0419083 0 0.908011869

Total number of rows: 9728

Table truncated, full table size 831 Kbytes.




Supplementary data files not provided
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