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GEO accession:
Sample GSM325326
Query DataSets for GSM325326
Status
Public on Apr 16, 2009
Title
Eye
Sample type
RNA
Source name
Eye tissue of pufferfish
Organism
Tetraodon nigroviridis
Characteristics
Eye
Extracted molecule
polyA RNA
Extraction protocol
mRNA extraction and cDNA synthesis were done as described by Zhang et al., 2004 (PMID: 15588312)
Label
Cy5 or Cy3
Label protocol
cDNA labelling procedures were done as described by Zhang et al., 2004 (PMID: 15588312)
Hybridization protocol
Hybridizations were carried out as described by Zhang et al., 2004 (PMID: 15588312)
Scan protocol
Arrays were scanned on an Axon 4000A scanner and images quatified using GenePix
Description
Eye tissue of pufferfish
Data processing
Data was processed as described by Zhang et al., 2004 (PMID: 15588312) and dye-swapped replicates were averaged.
Submission date
Sep 29, 2008
Last update date
Apr 16, 2009
Contact name
Esther T Chan
Organization name
Celgene Corporation
Street address
1500 Owens Street, Suite 500
City
San Francisco
State/province
California
ZIP/Postal code
94158
Country
USA
Platform ID
GPL7401
Series (1)
GSE12976
Expression of known and predicted genes in tissues of Tetraodon nigroviridis (pufferfish)
Data table header descriptions
ID_REF
Unique identifier
VALUE
Arcsinh-transformed normalized intensity.
Data table
ID_REF
VALUE
AY374473
4.908568
AY374473_B
5.115015
AY374473ALT
5.135336
AY374473ALT_B
5.456227
AY374474
5.8899
AY374474_B
6.055244
AY374475
4.364307
AY374475_B
4.504345
AY374477
4.778137
AY374477_B
4.051875
AY374477ALT
4.517729
AY374477ALT_B
4.582919
AY374478
4.543297
AY374478_B
4.397289
AY374478ALT
4.235619
AY374478ALT_B
4.147384
AY374479
3.099632
AY374479_B
3.613613
AY374479ALT
4.225129
AY374479ALT_B
4.596335
Total number of rows:
41533
Table truncated, full table size
1137 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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