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GEO accession:
Sample GSM325327
Query DataSets for GSM325327
Status
Public on Apr 16, 2009
Title
Fin
Sample type
RNA
Source name
Fin tissue of pufferfish
Organism
Tetraodon nigroviridis
Characteristics
Fin
Extracted molecule
polyA RNA
Extraction protocol
mRNA extraction and cDNA synthesis were done as described by Zhang et al., 2004 (PMID: 15588312)
Label
Cy5 or Cy3
Label protocol
cDNA labelling procedures were done as described by Zhang et al., 2004 (PMID: 15588312)
Hybridization protocol
Hybridizations were carried out as described by Zhang et al., 2004 (PMID: 15588312)
Scan protocol
Arrays were scanned on an Axon 4000A scanner and images quatified using GenePix
Description
Fin tissue of pufferfish
Data processing
Data was processed as described by Zhang et al., 2004 (PMID: 15588312) and dye-swapped replicates were averaged.
Submission date
Sep 29, 2008
Last update date
Apr 16, 2009
Contact name
Esther T Chan
Organization name
Celgene Corporation
Street address
1500 Owens Street, Suite 500
City
San Francisco
State/province
California
ZIP/Postal code
94158
Country
USA
Platform ID
GPL7401
Series (1)
GSE12976
Expression of known and predicted genes in tissues of Tetraodon nigroviridis (pufferfish)
Data table header descriptions
ID_REF
Unique identifier
VALUE
Arcsinh-transformed normalized intensity.
Data table
ID_REF
VALUE
AY374473
5.954878
AY374473_B
6.01554
AY374473ALT
6.280986
AY374473ALT_B
6.564457
AY374474
5.620793
AY374474_B
5.191624
AY374475
5.502826
AY374475_B
5.58702
AY374477
5.312719
AY374477_B
5.383325
AY374477ALT
5.001597
AY374477ALT_B
4.783441
AY374478
4.50762
AY374478_B
5.01396
AY374478ALT
4.728366
AY374478ALT_B
4.713755
AY374479
5.208319
AY374479_B
4.642539
AY374479ALT
5.627275
AY374479ALT_B
6.025807
Total number of rows:
41533
Table truncated, full table size
1137 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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