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Sample GSM325333 Query DataSets for GSM325333
Status Public on Apr 16, 2009
Title Liver
Sample type RNA
 
Source name Liver tissue of pufferfish
Organism Tetraodon nigroviridis
Characteristics Liver
Extracted molecule polyA RNA
Extraction protocol mRNA extraction and cDNA synthesis were done as described by Zhang et al., 2004 (PMID: 15588312)
Label Cy5 or Cy3
Label protocol cDNA labelling procedures were done as described by Zhang et al., 2004 (PMID: 15588312)
 
Hybridization protocol Hybridizations were carried out as described by Zhang et al., 2004 (PMID: 15588312)
Scan protocol Arrays were scanned on an Axon 4000A scanner and images quatified using GenePix
Description Liver tissue of pufferfish
Data processing Data was processed as described by Zhang et al., 2004 (PMID: 15588312) and dye-swapped replicates were averaged.
 
Submission date Sep 29, 2008
Last update date Apr 16, 2009
Contact name Esther T Chan
Organization name Celgene Corporation
Street address 1500 Owens Street, Suite 500
City San Francisco
State/province California
ZIP/Postal code 94158
Country USA
 
Platform ID GPL7401
Series (1)
GSE12976 Expression of known and predicted genes in tissues of Tetraodon nigroviridis (pufferfish)

Data table header descriptions
ID_REF Unique identifier
VALUE Arcsinh-transformed normalized intensity.

Data table
ID_REF VALUE
AY374473 5.438008
AY374473_B 5.686605
AY374473ALT 6.141232
AY374473ALT_B 6.186828
AY374474 5.576569
AY374474_B 5.509153
AY374475 5.659718
AY374475_B 5.761648
AY374477 5.814601
AY374477_B 5.879378
AY374477ALT 5.376785
AY374477ALT_B 5.321803
AY374478 3.634027
AY374478_B 4.353147
AY374478ALT 4.241963
AY374478ALT_B 4.361429
AY374479 4.194953
AY374479_B 4.21863
AY374479ALT 5.410367
AY374479ALT_B 5.031919

Total number of rows: 41533

Table truncated, full table size 1137 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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