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GEO help: Mouse over screen elements for information. |
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Status |
Public on Oct 01, 2008 |
Title |
breast |
Sample type |
SRA |
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Source name |
Human breast tissue
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Organism |
Homo sapiens |
Characteristics |
individual human breast
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Extracted molecule |
total RNA |
Extraction protocol |
mRNA is purified from total RNA with oligo-dT magnetic beads. cDNA is synthesized with random primer priming. ds-cDNA is sequenced using Illumina Genome Analyzers as recommended by the manufacturer.
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Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina Genome Analyzer |
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Description |
RNA_seq
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Data processing |
not applicable
realign.txt column headers (7) and header descriptions: Column I: tag sequence Column II: alignment score, for 32 bp, 16000 = perfect match, 14593 = 1bp mismatch, 13906 = 2bp mismatch Column III: # of hit in the genome, 1 = unique hit Column IV: Chr position Column V: Chr direction Column VI: matched genome sequence Column VII: next best possible alignment score
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Submission date |
Sep 30, 2008 |
Last update date |
May 15, 2019 |
Contact name |
Shujun Luo |
E-mail(s) |
sluo@illumina.com
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Organization name |
Illumina inc
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Street address |
25861 Industrial Blvd
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City |
Hayward |
State/province |
CA |
ZIP/Postal code |
94545 |
Country |
USA |
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Platform ID |
GPL9052 |
Series (1) |
GSE12946 |
Alternative Isoform Regulation in Human Tissue Transcriptomes |
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Relations |
SRA |
SRX003922 |
BioSample |
SAMN02195705 |
Supplementary file |
Size |
Download |
File type/resource |
GSM325486_HCT202_s2468_realign.txt.gz |
348.6 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
Raw data are available in SRA |
Processed data provided as supplementary file |
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