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Sample GSM3255 Query DataSets for GSM3255
Status Public on Apr 02, 2003
Title somatic embryos 0_1
Sample type RNA
 
Channel 1
Source name 0 d abaxial
Organism Glycine max
Extracted molecule total RNA
 
Channel 2
Source name 0 d adaxial
Organism Glycine max
Extracted molecule total RNA
 
 
Description Comparison of adaxial and abaxial sides of
4-6 mm cotyledons (replicate 1).
Scanned with ScanArray 3000.
Quantitated with GenePix 3.0.
Keywords = somatic embryogenesis
Lot batch = 0012_C07
 
Submission date Dec 20, 2002
Last update date May 27, 2005
Contact name Lila O. Vodkin
E-mail(s) l-vodkin@illinois.edu
Phone 217-244-6147
Organization name University of Illinois
Department Crop Sciences
Lab Lila Vodkin
Street address 1201 W. Gregory Dr.
City Urbana
State/province IL
ZIP/Postal code 61801
Country USA
 
Platform ID GPL229
Series (1)
GSE136 Somatic embryogenesis

Data table header descriptions
ID_REF
F_Pixels number of pixels in the spot
B_Pixels number of pixels in the background
F635Mean channel 2 mean spot intensity
F635SD standard deviation around channel 2 mean spot intensity
B635Median channel 2 median background intensity
B635SD standard deviation around channel 2 mean background intensity
F532Mean channel 1 mean spot intensity
F532SD standard deviation around channel 1 mean spot intensity
B532Median channel 1 median background intensity
B532SD standard deviation around channel 1 mean background intensity
S635N channel 2 normalized and background-corrected spot signal
S532N channel 1 normalized and background-corrected spot signal
VALUE log ratio of PRE_VALUE
Flags user-defined flags (default = 0)
PRE_VALUE S635N/S532N

Data table
ID_REF F_Pixels B_Pixels F635Mean F635SD B635Median B635SD F532Mean F532SD B532Median B532SD S635N S532N VALUE Flags PRE_VALUE
1 208 1240 30462 13789 89 77 24504 11153 40 105 35169 26522 0.1225543 0 1.326031219
2 208 1132 27996 16068 83 117 22168 12636 47 180 32321 23981 0.1296183 0 1.347775322
3 208 1123 4004 2075 80 74 1101 625 43 92 4543 1146 0.5981583 0 3.964223386
4 208 1124 4191 1943 74 108 1179 572 39 142 4766 1235 0.5864873 0 3.859109312
5 208 1048 1809 724 77 70 1634 740 38 87 2005 1730 0.0640683 0 1.158959538
6 208 1083 1955 726 80 110 1879 863 45 192 2170 1987 0.0382623 0 1.092098641
7 208 1084 1893 766 82 110 1792 710 42 124 2095 1897 0.0431173 0 1.104375329
8 208 1057 1956 707 81 69 1691 767 39 81 2170 1789 0.0838493 0 1.212968139
9 208 1084 1131 639 83 68 880 627 37 84 1213 913 0.1233903 0 1.328587076
10 208 1126 1096 629 83 129 999 696 36 86 1172 1043 0.0506433 0 1.123681687
11 156 1011 860 444 85 83 839 509 38 116 896 867 0.0142893 0 1.033448674
12 208 1108 862 430 84 83 817 557 38 116 899 844 0.0274173 0 1.065165877
13 208 1071 786 446 82 63 736 512 37 84 814 757 0.0315293 0 1.075297226
14 208 1156 809 440 81 279 745 488 38 458 842 765 0.0416513 0 1.100653595
15 156 911 219 144 81 71 198 192 37 72 158 173 -0.0393893 0 0.913294798
16 208 1244 213 174 81 142 195 184 37 181 152 170 -0.0486053 0 0.894117647
17 120 737 964 639 83 66 871 586 42 268 1019 898 0.0548983 0 1.134743875
18 120 736 3025 749 85 147 2754 782 47 239 3403 2933 0.0645503 0 1.160245482
19 156 832 5273 1162 79 140 4529 1062 46 226 6013 4859 0.0925443 0 1.237497427
20 120 699 3304 638 77 183 3007 792 42 264 3735 3213 0.0653803 0 1.162464986

Total number of rows: 9728

Table truncated, full table size 750 Kbytes.




Supplementary data files not provided
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