NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM3257 Query DataSets for GSM3257
Status Public on Apr 01, 2003
Title somatic embryos 7_1
Sample type RNA
 
Channel 1
Source name 7 d abaxial
Organism Glycine max
Extracted molecule total RNA
 
Channel 2
Source name 7 d adaxial
Organism Glycine max
Extracted molecule total RNA
 
 
Description Comparison of adaxial and abaxial sides of
4-6 mm cotyledons after 7 days on
40mg/L 2,4-D (replicate 1).
Scanned with ScanArray 3000.
Quantitated with GenePix 3.0.

Lot batch = 0012_D01
 
Submission date Dec 20, 2002
Last update date May 27, 2005
Contact name Lila O. Vodkin
E-mail(s) l-vodkin@illinois.edu
Phone 217-244-6147
Organization name University of Illinois
Department Crop Sciences
Lab Lila Vodkin
Street address 1201 W. Gregory Dr.
City Urbana
State/province IL
ZIP/Postal code 61801
Country USA
 
Platform ID GPL229
Series (1)
GSE136 Somatic embryogenesis

Data table header descriptions
ID_REF
F_Pixels number of pixels in the spot
B_Pixels number of pixels in the background
F635Mean channel 2 mean spot intensity
F635SD standard deviation around channel 2 mean spot intensity
B635Median channel 2 median background intensity
B635SD standard deviation around channel 2 mean background intensity
F532Mean channel 1 mean spot intensity
F532SD standard deviation around channel 1 mean spot intensity
B532Median channel 1 median background intensity
B532SD standard deviation around channel 1 mean background intensity
S635N channel 2 normalized and background-corrected spot signal
S532N channel 1 normalized and background-corrected spot signal
VALUE log ratio of PRE_VALUE
Flags user-defined flags (default = 0)
PRE_VALUE S635N/S532N

Data table
ID_REF F_Pixels B_Pixels F635Mean F635SD B635Median B635SD F532Mean F532SD B532Median B532SD S635N S532N VALUE Flags PRE_VALUE
1 156 1072 49598 20180 355 3133 34311 17155 264 5484 47690 42374 0.0513283 0 1.125454288
2 156 1006 44550 21511 377 3420 29341 16984 281 7390 42779 36167 0.0729183 0 1.182818592
3 156 987 21838 11823 360 4912 15376 8701 277 6017 20800 18791 0.0441133 0 1.106912884
4 208 1163 19412 11274 365 5911 14292 8837 247 5695 18446 17479 0.0233863 0 1.055323531
5 156 987 12979 7597 292 482 7773 4770 227 783 12286 9390 0.1167453 0 1.308413206
6 156 1004 13035 8074 314 714 8201 5154 235 1420 12319 9913 0.0943703 0 1.242711591
7 156 1021 12638 7834 339 779 8536 5120 224 1337 11910 10344 0.0612233 0 1.151392111
8 156 1027 13599 5822 335 1798 9106 4394 271 1809 12845 10995 0.0675393 0 1.168258299
9 156 1020 9029 5509 371 1928 6048 3618 244 1566 8384 7222 0.0647943 0 1.160897258
10 156 962 9198 5844 343 621 5779 4006 248 444 8574 6883 0.0954063 0 1.245677757
11 156 1006 30680 18398 323 2427 17826 11450 248 3495 29398 21877 0.1283303 0 1.343785711
12 156 948 30282 17329 306 888 19030 11386 222 1958 29030 23408 0.0934833 0 1.240174299
13 156 969 25644 16732 314 535 17474 11300 217 564 24530 21477 0.0577243 0 1.14215207
14 208 1125 27722 17876 299 511 18775 11964 212 785 26558 23102 0.0605463 0 1.149597437
15 80 597 717 605 282 544 524 590 253 498 420 337 0.0956193 0 1.246290801
16 156 1120 773 727 303 513 691 650 234 446 454 568 -0.0972923 0 0.799295775
17 80 578 1628 960 366 832 1241 873 274 3639 1222 1203 0.0068063 0 1.015793849
18 120 695 7176 2563 377 804 4771 1947 266 3795 6584 5606 0.0698373 0 1.17445594
19 120 749 13562 3527 357 6084 9402 3380 305 6130 12788 11322 0.0528793 0 1.129482424
20 120 644 6602 2358 379 6532 4735 1972 301 6410 6026 5518 0.0382473 0 1.092062341

Total number of rows: 9728

Table truncated, full table size 806 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap