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Sample GSM3259 Query DataSets for GSM3259
Status Public on Apr 02, 2003
Title somatic embryos 7_2
Sample type RNA
 
Channel 1
Source name 7 d adaxial
Organism Glycine max
Extracted molecule total RNA
 
Channel 2
Source name 7 d abaxial
Organism Glycine max
Extracted molecule total RNA
 
 
Description Comparison of adaxial and abaxial sides of
4-6 mm cotyledons after 7 days on
40mg/L 2,4-D (replicate 2).
Scanned with ScanArray 3000.
Quantitated with GenePix 3.0.
Keywords = somatic embryogenesis
Lot batch = 0012_C09
 
Submission date Dec 20, 2002
Last update date May 27, 2005
Contact name Lila O. Vodkin
E-mail(s) l-vodkin@illinois.edu
Phone 217-244-6147
Organization name University of Illinois
Department Crop Sciences
Lab Lila Vodkin
Street address 1201 W. Gregory Dr.
City Urbana
State/province IL
ZIP/Postal code 61801
Country USA
 
Platform ID GPL229
Series (1)
GSE136 Somatic embryogenesis

Data table header descriptions
ID_REF
F_Pixels number of pixels in the spot
B_Pixels number of pixels in the background
F635Mean channel 2 mean spot intensity
F635SD standard deviation around channel 2 mean spot intensity
B635Median channel 2 median background intensity
B635SD standard deviation around channel 2 mean background intensity
F532Mean channel 1 mean spot intensity
F532SD standard deviation around channel 1 mean spot intensity
B532Median channel 1 median background intensity
B532SD standard deviation around channel 1 mean background intensity
S635N channel 2 normalized and background-corrected spot signal
S532N channel 1 normalized and background-corrected spot signal
VALUE log ratio of PRE_VALUE
Flags user-defined flags (default = 0)
PRE_VALUE S532N/S635N

Data table
ID_REF F_Pixels B_Pixels F635Mean F635SD B635Median B635SD F532Mean F532SD B532Median B532SD S635N S532N VALUE Flags PRE_VALUE
1 208 1240 29468 19678 259 268 35528 22410 222 322 37734 32999 -0.0582323 0 0.874516351
2 208 1114 34667 19422 270 275 39945 19489 226 320 44436 37125 -0.0780683 0 0.83547124
3 208 1116 14577 6928 264 741 15608 7886 236 625 18490 14368 -0.1095413 0 0.777068686
4 208 1156 14653 7970 229 258 15614 7865 225 321 18633 14383 -0.1124333 0 0.771910052
5 156 987 10059 4291 221 381 12711 5573 196 844 12708 11697 -0.0360033 0 0.920443815
6 156 1018 8530 4141 221 513 11432 5702 183 1289 10733 10514 -0.0089533 0 0.97959564
7 156 1014 9728 4465 218 587 12598 5942 232 1414 12285 11557 -0.0265303 0 0.940740741
8 208 1147 10293 5299 221 451 12001 5886 229 937 13011 11002 -0.0728393 0 0.845592191
9 208 1118 7610 4999 247 237 7764 5150 215 311 9511 7056 -0.1296683 0 0.741877826
10 156 978 7770 4808 235 781 8166 4776 212 1186 9733 7434 -0.1170243 0 0.763793281
11 156 1012 21744 11989 231 1363 21825 11173 251 2819 27791 20164 -0.1393273 0 0.725558634
12 208 1128 23145 11574 222 1098 21967 10638 251 2463 29613 20297 -0.1640513 0 0.685408435
13 208 1096 20236 11716 218 235 19656 11233 229 304 25860 18158 -0.1535613 0 0.702165507
14 208 1117 21627 11270 232 241 22609 10843 219 548 27639 20927 -0.1208153 0 0.757154745
15 156 955 504 359 216 294 606 513 190 299 371 387 0.0183373 100 1.043126685
16 120 748 600 431 209 234 823 636 215 321 505 568 0.0510573 0 1.124752475
17 120 646 1110 686 261 265 1119 745 230 337 1096 830 -0.1207323 0 0.75729927
18 120 682 4509 1377 277 894 5935 2358 217 472 5466 5343 -0.0098843 0 0.977497256
19 120 752 8753 1826 261 888 10122 2540 219 923 10970 9255 -0.0738303 0 0.84366454
20 120 653 4951 1307 260 341 5813 1438 221 707 6059 5226 -0.0642323 0 0.862518567

Total number of rows: 9728

Table truncated, full table size 807 Kbytes.




Supplementary data files not provided
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