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Sample GSM3269 Query DataSets for GSM3269
Status Public on Apr 03, 2003
Title somatic embryos 28_1
Sample type RNA
 
Channel 1
Source name 28 d abaxial
Organism Glycine max
Extracted molecule total RNA
 
Channel 2
Source name 28 d adaxial
Organism Glycine max
Extracted molecule total RNA
 
 
Description Comparison of adaxial and abaxial sides of
4-6 mm cotyledons after 28 days on
40mg/L 2,4-D (replicate 1).
Scanned with ScanArray 3000.
Quantitated with GenePix 3.0.
Keywords = somatic embryogenesis
Lot batch = 0012_E02
 
Submission date Dec 20, 2002
Last update date May 27, 2005
Contact name Lila O. Vodkin
E-mail(s) l-vodkin@illinois.edu
Phone 217-244-6147
Organization name University of Illinois
Department Crop Sciences
Lab Lila Vodkin
Street address 1201 W. Gregory Dr.
City Urbana
State/province IL
ZIP/Postal code 61801
Country USA
 
Platform ID GPL229
Series (1)
GSE136 Somatic embryogenesis

Data table header descriptions
ID_REF
F_Pixels number of pixels in the spot
B_Pixels number of pixels in the background
F635Mean channel 2 mean spot intensity
F635SD standard deviation around channel 2 mean spot intensity
B635Median channel 2 median background intensity
B635SD standard deviation around channel 2 mean background intensity
F532Mean channel 1 mean spot intensity
F532SD standard deviation around channel 1 mean spot intensity
B532Median channel 1 median background intensity
B532SD standard deviation around channel 1 mean background intensity
S635N channel 2 normalized and background-corrected spot signal
S532N channel 1 normalized and background-corrected spot signal
VALUE log ratio of PRE_VALUE
Flags user-defined flags (default = 0)
PRE_VALUE S635N/S532N

Data table
ID_REF F_Pixels B_Pixels F635Mean F635SD B635Median B635SD F532Mean F532SD B532Median B532SD S635N S532N VALUE Flags PRE_VALUE
1 156 1093 50782 16835 685 1730 20569 9375 382 3214 45758 24972 0.2630143 0 1.832372257
2 156 1025 50197 19559 682 2231 20933 11073 434 4402 45227 25358 0.2512833 0 1.783539711
3 156 991 4422 2366 708 1481 3330 2042 334 3044 3391 3705 -0.0384603 0 0.915249663
4 156 1037 4304 2224 690 607 3311 1996 322 652 3300 3696 -0.0492183 0 0.892857143
5 156 1022 5410 2851 682 560 5343 3164 356 991 4318 6168 -0.1548623 0 0.700064851
6 156 1005 5618 2961 688 591 5931 3163 394 1607 4502 6849 -0.1822223 0 0.657322237
7 156 1054 2759 1481 651 650 2123 1190 391 868 1924 2142 -0.0466143 0 0.898225957
8 156 1003 2581 1356 699 626 1927 1241 364 511 1718 1932 -0.0509843 0 0.889233954
9 208 1175 2135 1315 722 654 1680 1283 353 513 1289 1640 -0.1045913 0 0.78597561
10 156 990 2118 1273 696 651 1889 1367 345 825 1298 1909 -0.1675313 0 0.67993714
11 156 1007 4763 2701 666 1550 4448 2753 390 3169 3741 5019 -0.1276293 0 0.745367603
12 156 1010 5519 2251 708 724 5648 2413 400 957 4393 6491 -0.1695503 0 0.676783238
13 156 992 4759 2148 687 1393 4801 2631 377 2537 3719 5471 -0.1676413 0 0.679766039
14 156 872 4435 2425 654 536 4573 2478 307 817 3452 5277 -0.1843163 0 0.65415956
15 316 1448 919 645 628 563 619 579 328 743 265 359 -0.1318493 5 0.73816156
16 316 1753 923 685 667 539 608 572 346 504 233 323 -0.1418473 5 0.721362229
17 120 782 1773 1054 716 584 1124 1055 385 2365 965 913 0.0240573 0 1.056955093
18 120 751 6904 2554 683 638 3929 1542 363 2560 5681 4411 0.1098883 0 1.287916572
19 120 748 10306 2424 681 568 6557 2500 297 632 8791 7742 0.0551853 0 1.135494704
20 120 690 6159 1861 668 729 3437 1489 305 631 5014 3874 0.1120253 0 1.294269489

Total number of rows: 9728

Table truncated, full table size 796 Kbytes.




Supplementary data files not provided
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