NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM3270 Query DataSets for GSM3270
Status Public on Apr 03, 2003
Title somatic embryos 28_2
Sample type RNA
 
Channel 1
Source name 28-d adaxial
Organism Glycine max
Extracted molecule total RNA
 
Channel 2
Source name 28-d abaxial
Organism Glycine max
Extracted molecule total RNA
 
 
Description Comparison of adaxial and abaxial sides of
4-6 mm cotyledons after 28 days on
40mg/L 2,4-D (replicate 2).
Scanned with ScanArray 3000.
Quantitated with GenePix 3.0.
Keywords = somatic embryogenesis
Lot batch = 0012_D08
 
Submission date Dec 20, 2002
Last update date May 27, 2005
Contact name Lila O. Vodkin
E-mail(s) l-vodkin@illinois.edu
Phone 217-244-6147
Organization name University of Illinois
Department Crop Sciences
Lab Lila Vodkin
Street address 1201 W. Gregory Dr.
City Urbana
State/province IL
ZIP/Postal code 61801
Country USA
 
Platform ID GPL229
Series (1)
GSE136 Somatic embryogenesis

Data table header descriptions
ID_REF
F_Pixels number of pixels in the spot
B_Pixels number of pixels in the background
F635Mean channel 2 mean spot intensity
F635SD standard deviation around channel 2 mean spot intensity
B635Median channel 2 median background intensity
B635SD standard deviation around channel 2 mean background intensity
F532Mean channel 1 mean spot intensity
F532SD standard deviation around channel 1 mean spot intensity
B532Median channel 1 median background intensity
B532SD standard deviation around channel 1 mean background intensity
S635N channel 2 normalized and background-corrected spot signal
S532N channel 1 normalized and background-corrected spot signal
VALUE log ratio of PRE_VALUE
Flags user-defined flags (default = 0)
PRE_VALUE S532N/S635N

Data table
ID_REF F_Pixels B_Pixels F635Mean F635SD B635Median B635SD F532Mean F532SD B532Median B532SD S635N S532N VALUE Flags PRE_VALUE
1 208 1247 26520 9714 1102 858 45338 16998 480 544 27766 41351 0.1729733 0 1.489267449
2 208 1138 22544 11721 1066 837 42106 20861 452 562 23463 38397 0.2139143 0 1.636491497
3 156 949 3602 1738 1013 817 3367 1929 451 524 2827 2686 -0.0222203 0 0.950123806
4 208 1179 4003 1946 976 834 3361 1883 398 519 3306 2730 -0.0831403 0 0.825771325
5 208 1095 7510 4191 980 787 5370 3020 399 518 7133 4582 -0.1922173 0 0.642366466
6 208 1143 7115 3820 1073 869 5471 3260 416 606 6599 4659 -0.1511853 0 0.706016063
7 156 980 3047 1406 1152 1031 2396 1258 435 754 2069 1807 -0.0588023 0 0.873368777
8 208 1056 3196 1735 1172 862 2235 1314 430 512 2210 1663 -0.1235003 0 0.752488688
9 208 1108 3528 1799 1214 2491 1895 1354 428 2050 2527 1352 -0.2716293 0 0.535021765
10 208 1111 3383 1835 1210 858 2115 1328 465 706 2373 1520 -0.1934543 0 0.640539402
11 156 966 7433 3858 1203 960 4055 2296 485 1055 6805 3290 -0.3156323 0 0.483468038
12 208 1148 6514 3312 1206 883 3651 2190 459 665 5798 2942 -0.2946363 0 0.50741635
13 156 949 6171 3207 1168 897 3538 1999 452 561 5465 2844 -0.2836613 0 0.520402562
14 208 1058 6562 3630 1221 889 3528 2083 464 548 5833 2824 -0.3150273 0 0.484141951
15 316 1674 1415 939 1143 1029 733 615 409 770 296 298 0.0029253 5 1.006756757
16 120 790 1712 1042 1087 849 885 724 408 504 682 439 -0.1913203 0 0.643695015
17 80 456 1818 1009 1089 804 1368 1014 485 543 795 813 0.0097233 0 1.022641509
18 120 762 5635 2349 1043 856 6099 2534 404 631 5015 5249 0.0198063 0 1.04666002
19 120 767 7944 2191 995 903 7871 2378 395 616 7590 6891 -0.0419603 0 0.907905138
20 120 738 3921 1571 1013 814 3966 1737 401 555 3176 3285 0.0146553 0 1.034319899

Total number of rows: 9728

Table truncated, full table size 800 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap