|
| Status |
Public on Nov 12, 2009 |
| Title |
Ad libitum feeding in Liver of Cry1,Cry2 KO mice_CT38 |
| Sample type |
RNA |
| |
|
| Source name |
Cry1,Cry2 KO mouse Liver under ad libitum feeding at circadian time 38
|
| Organism |
Mus musculus |
| Characteristics |
Strain: Cry1,Cry2 double KO mice, Gender: female, Age: 8-16 weeks, Condition: ad libitum food availability
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol extraction followed by Qiagen RNeasy columns
|
| Label |
Biotin
|
| Label protocol |
Standard Affymetrix protocol
|
| |
|
| Hybridization protocol |
Standard Affymetrix protocol
|
| Scan protocol |
Standard Affymetrix scan protocol
|
| Description |
Food was made available ad libitum for two weeks to Cry1,Cry2 double KO mice. Mice were then released into constant darkness and tissue was collected during the second day of constant darkness
|
| Data processing |
Data from CEL files were normalized in R using the 'affy' package and the gcRMA algorithm. Log transformation of values was reversed and all values of a series of arrays were median normalized to 100
|
| |
|
| Submission date |
Oct 05, 2008 |
| Last update date |
Apr 18, 2011 |
| Contact name |
Christopher Vollmers |
| E-mail(s) |
vollmers@salk.edu
|
| URL |
http://www.salk.edu/faculty/faculty_details.php?id=65
|
| Organization name |
The Salk Institute for Biological Studies
|
| Department |
Regulatory Biology Laboratory
|
| Lab |
Panda Lab (RBIO-P)
|
| Street address |
10010 North Torrey Pines Road
|
| City |
La Jolla |
| State/province |
CA |
| ZIP/Postal code |
92037 |
| Country |
USA |
| |
|
| Platform ID |
GPL1261 |
| Series (2) |
| GSE13062 |
The effects of temporally restricted feeding on hepatic gene expression of Cry1, Cry2 double KO mice |
| GSE13093 |
Feeding schedule and the circadian clock shape rhythms in hepatic gene expression |
|
| Relations |
| Reanalyzed by |
GSE28622 |
