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Sample GSM334817 Query DataSets for GSM334817
Status Public on Oct 31, 2008
Title Doberman Pinscher
Sample type genomic
 
Channel 1
Source name Doberman Pinscher
Organism Canis lupus familiaris
Characteristics Male Doberman Pinscher sample
Extracted molecule genomic DNA
Extraction protocol Qiagen QIAamp DNA Blood Maxi Kit
Label Cy3
Label protocol Labeled by Nimblegen
 
Channel 2
Source name Boxer
Organism Canis lupus familiaris
Characteristics Female Boxer sample
Extracted molecule genomic DNA
Extraction protocol Qiagen QIAamp DNA Blood Maxi Kit
Label Cy5
Label protocol Labeled by Nimblegen
 
 
Hybridization protocol Performed by Nimblegen standard protocol
Scan protocol Performed by Nimblegen standard protocol
Description Hybridization of Doberman Pinscher test sample and Boxer reference sample
Data processing Normalized by standard Nimblegen methods.
 
Submission date Oct 17, 2008
Last update date Oct 24, 2008
Contact name Thomas J Nicholas
E-mail(s) tjn3@u.washington.edu
Phone 206 897-1846
Fax 206 897-1846
Organization name University of Washington
Department Genome Sciences
Lab Akey Lab
Street address 1705 NE Pacific St. Foege Building
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL7501
Series (1)
GSE13266 Canine CNVs associated with canFam2 segmental duplications

Data table header descriptions
ID_REF
VALUE Normalized log2 ratio (test sample/boxer reference)

Data table
ID_REF VALUE
1 0.441
2 0.342
3 0.561
4 0.174
5 0.218
6 0.299
7 0.058
8 0.762
9 0.078
10 -0.153
11 -0.007
12 0.273
13 0.220
14 0.144
15 0.845
16 0.151
17 0.245
18 0.158
19 0.098
20 -0.057

Total number of rows: 386428

Table truncated, full table size 4980 Kbytes.




Supplementary file Size Download File type/resource
GSM334817_5166702_532.pair.gz 6.3 Mb (ftp)(http) PAIR
GSM334817_5166702_635.pair.gz 6.2 Mb (ftp)(http) PAIR
GSM334817_doberman_chr_raw_log2_scores.txt.gz 4.9 Mb (ftp)(http) TXT
Processed data included within Sample table

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