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Sample GSM339102 Query DataSets for GSM339102
Status Public on Nov 08, 2008
Title Ag-D-FY-1N-B-g311-c2-DNA
Sample type genomic
 
Channel 1
Source name FY4H genomic DNA (Strain Name : FY haploid)
Organism Saccharomyces cerevisiae
Characteristics Strain Name : FY haploid
Biomaterial provider Maitreya Dunham, Dunham Lab, University of Washington
Extracted molecule genomic DNA
Extraction protocol Extracted molecule : Genomic DNA
Extraction method : Hoffman-Winston prep http://genomics.princeton.edu/dunham/MDyeastDNAprep.pdf
Label Cy3
Label protocol reference URL : http://genomics.princeton.edu/dunham/MDAgilentDNA.pdf
 
Channel 2
Source name 10341c2 genomic DNA (Strain Name : G2 c2)
Organism Saccharomyces cerevisiae
Characteristics Strain Name : G2 c2
Biomaterial provider Maitreya Dunham, Dunham Lab, University of Washington
Extracted molecule genomic DNA
Extraction protocol Extracted molecule : Genomic DNA
Extraction method : Hoffman-Winston prep http://genomics.princeton.edu/dunham/MDyeastDNAprep.pdf
Label Cy5
Label protocol reference URL : http://genomics.princeton.edu/dunham/MDAgilentDNA.pdf
 
 
Hybridization protocol reference URL : http://genomics.princeton.edu/dunham/MDAgilentDNA.pdf
Scan protocol Pixel Size : 10
Scan Date : 2004-12-08
Scan Time : 12:26:44
Scanner Make : Agilent Technologies Scanner
Scanner Model : G2505B
Scanning software : ChipScan
Scanning software version : A.6.3.1
Description Experiment design: DNA from each evolved clone or population is hybridized vs DNA from the matched ancestor strain
Complete protocols also available as supplementary files on the Series record
Data processing Extraction Software : Agilent Feature Extractor
Extraction Software Version : A.7.5.1
Datafile type : Agilent result file
 
Submission date Nov 03, 2008
Last update date Nov 07, 2008
Contact name Maitreya J. Dunham
E-mail(s) maitreya@uw.edu
Phone 206-543-2338
Organization name University of Washington
Department Genome Sciences
Lab Dunham Lab
Street address Foege Building, S403B, Box 355065
City Seattle
State/province WA
ZIP/Postal code 98195-5065
Country USA
 
Platform ID GPL884
Series (1)
GSE13435 The Repertoire and Dynamics of Evolutionary Adaptations to Controlled Nutrient-Limited Environments in Yeast

Data table header descriptions
ID_REF Uniquely identifies feature/spot in array layout.
VALUE log(base 2) (R_PROCESSED_SIGNAL/G_PROCESSED_SIGNAL)
R_PROCESSED_SIGNAL The propagated feature signal in the red channel, used for computation of log ratio
G_PROCESSED_SIGNAL The propagated feature signal in the green channel, used for computation of log ratio
R_MEAN_SIGNAL Mean foreground intensity Ch 2.
G_MEAN_SIGNAL Mean foreground intensity Ch 1.

Data table
ID_REF VALUE R_PROCESSED_SIGNAL G_PROCESSED_SIGNAL R_MEAN_SIGNAL G_MEAN_SIGNAL
1 -6.122 53.52533 3728.19 90.84746 1649.254
2 0 7.378801 4.785525 55.37097 28.79032
3 .16 1032.967 924.515 628.5 437.2931
4 -.372 426.3766 551.6552 298.4483 270.6379
5 .006 816.6855 813.2899 509.3571 389.3393
6 -.26 717.1132 858.5892 455.0172 409.5517
7 -.131 955.5462 1046.697 587.15 491.5667
8 -6.644 7.812461 3348.55 64.83051 1515.763
9 -.296 584.0302 717.1766 383.7857 347.125
10 -.255 576.0521 687.4365 379.8966 334.2069
11 .06 961.8299 922.7461 591.4833 438.5833
12 .314 1000.323 804.5877 612.6 387.3333
13 .362 433.8501 337.6085 305.9322 179.9153
14 -.004 573.0317 574.5577 380.6316 285.5965
15 -6.644 7.404727 3433.103 65.32258 1600.065
16 .089 443.9918 417.474 312.7333 216.0167
17 .649 3826.419 2439.706 2236.754 1073.689
18 .176 937.0813 829.6431 580.3448 400.9483
19 -.107 963.9722 1038.073 596.3051 492.7627
20 -.051 817.039 846.3461 515.2281 409.7895

Total number of rows: 10807

Table truncated, full table size 480 Kbytes.




Supplementary file Size Download File type/resource
GSM339102.txt.gz 2.4 Mb (ftp)(http) TXT
Processed data included within Sample table

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