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Sample GSM339376 Query DataSets for GSM339376
Status Public on Nov 28, 2008
Title Magnifica_hyb_1
Sample type genomic
 
Source name Clam gill tissue containing symbionts
Organism Calyptogena magnifica symbiont
Characteristics Calyptogena magnifica symbiont
Treatment protocol dilute DNAse treatment to remove much of host genomic DNA contamination
Extracted molecule genomic DNA
Extraction protocol Qiagen genomic tip extraction protocol
Label biotin
Label protocol Enzo bioarray kit
 
Hybridization protocol ProkGE_WS2v3
Scan protocol Gene chips were scanned using the GeneChip Scanner 3000
Description comparative genomic hybridization
Data processing GCOS affymetrix processing
 
Submission date Nov 03, 2008
Last update date Nov 03, 2008
Contact name Irene Newton
E-mail(s) garcia@fas.harvard.edu
Organization name Harvard University
Department OEB
Lab Cavanaugh
Street address 16 Divinity Ave
City Cambridge
State/province MA
ZIP/Postal code 02138
Country USA
 
Platform ID GPL7552
Series (1)
GSE13447 Heterologous Microarray Hybridization Between Vesicomyid Symbionts

Data table header descriptions
ID_REF
VALUE signal calculated by GCOS software
DETECTION P-VALUE

Data table
ID_REF VALUE DETECTION P-VALUE
AFFX-BioB-3_at 63.31644 0.00094
AFFX-BioB-5_at 71.95981 0.00004
AFFX-BioB-M_at 79.59583 0.00016
AFFX-BioC-3_at 91.32468 7.65E-07
AFFX-BioC-5_at 102.02839 4.48E-07
AFFX-BioDn-3_at 518.91724 8.98E-39
AFFX-BioDn-5_at 234.52737 1.09E-20
AFFX-CreX-3_at 1645.6781 0
AFFX-CreX-5_at 1504.0813 0
AFFX-DapX-3_at -12.95163 0.83665
AFFX-DapX-5_at 45.708 0.00116
AFFX-DapX-M_at 0.3529 0.4892
AFFX-LysX-3_at 14.79564 0.11882
AFFX-LysX-5_at 21.02888 0.0361
AFFX-LysX-M_at -16.62869 0.85646
AFFX-PheX-3_at -19.75603 0.93391
AFFX-PheX-5_at -14.8827 0.86902
AFFX-PheX-M_at -35.42517 0.98234
AFFX-r2-Bs-dap-3_at -10.3326 0.80843
AFFX-r2-Bs-dap-5_at -19.14795 0.88264

Total number of rows: 1121

Table truncated, full table size 31 Kbytes.




Supplementary file Size Download File type/resource
GSM339376.CEL.gz 2.8 Mb (ftp)(http) CEL
Processed data included within Sample table
Processed data are available on Series record

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