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Sample GSM3403698 Query DataSets for GSM3403698
Status Public on Oct 09, 2020
Title RNA-OvaryPart_Adult_To-R2
Sample type SRA
 
Source name Ovarian part of the ovotestis
Organism Talpa occidentalis
Characteristics genotype: Wild type
age: Adult
Treatment protocol Gonads were disected rapidly after the animal was sacrified and then preserved in RNA later until the extraction
Extracted molecule polyA RNA
Extraction protocol RNA was extracted from the gonads using the RNeasy kit from Qiagen
RNA libraries were prepared for sequencing using standard Illumina protocols
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
 
Data processing For all samples 50bp paired-end reads were mapped against the respective genome (talOcc4, mm9) using STAR v2.6.1d (Dobin et al., 2013) with the following options: --chimSegmentMin 10 alignIntronMin 20 outFilterMismatchNoverReadLmax 0.05 --outFilterMismatchNmax 10 --outFilterMultimapNmax 5.
Genome_build: talOcc4, mm9
 
Submission date Sep 27, 2018
Last update date Oct 10, 2020
Contact name Francisca Martinez Real
E-mail(s) martinez@molgen.mpg.de
Organization name Max Planck Institute for Molecular Genetics
Street address Ihnestrasse 73
City Berlin
ZIP/Postal code D-14195
Country Germany
 
Platform ID GPL25619
Series (2)
GSE120582 The mole genome reveals regulatory rearrangements associated with adaptive intersexuality (RNA-Seq)
GSE120589 The mole genome reveals regulatory rearrangements associated with adaptive intersexuality
Relations
BioSample SAMN10138988
SRA SRX4746075

Supplementary file Size Download File type/resource
GSM3403698_RNA-OvaryPart_Adult_To-R2.bw 244.2 Mb (ftp)(http) BW
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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