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Sample GSM34759

Query DataSets for GSM34759

Status

Public on Nov 10, 2004

Title

PMI40 deletion strain, 5 g/L initial mannose, repeat 2/3

Sample type

RNA

Source name

Total RNA from an aerobic batch culture of a pmi40 deletion strain

Organism

Saccharomyces cerevisiae

Extracted molecule

total RNA

Description

A Saccharomyces cerevisiae strain with PMI40 knockout (parent CEN.PK113-7A) was cultivated in an aerated batch with mineral medium initially containing 15 g/L glucose and 5 g/L mannose. Samples for gene expression measurement were taken 6 hours after inoculation. Replicate assay 2 of 3.

Submission date

Nov 08, 2004

Last update date

May 27, 2005

Contact name

Anssi Torma

E-mail(s)

atorma@cc.hut.fi

Phone

+358-9-19125226

Organization name

Haartman Institute

Department

Department of Bacteriology and Immunology

Lab

Rational Drug Design Program

Street address

Haartmaninkatu 8

City

Helsinki

ZIP/Postal code

FIN-00290

Country

Finland

Platform ID

GPL90

Series (1)

GSE1938

Phosphomannose isomerase gene (PMI40) deletion strain cultivated in varying initial mannose concentrations

Data table header descriptions
ID_REF
VALUE	signal
ABS_CALL	absolute detection call
DETECTION P-VALUE	detection p-value (here P: p < 0.04, M: 0.04 <= p < 0.06, A: p >= 0.06)

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-MurIL2_at	4.5	A	0.712257
AFFX-MurIL10_at	0.7	A	0.860518
AFFX-MurIL4_at	4.6	A	0.262827
AFFX-MurFAS_at	1.8	A	0.672921
AFFX-BioB-5_at	41	P	0.00762
AFFX-BioB-M_at	27.3	P	0.00039
AFFX-BioB-3_at	30.8	P	0.00844
AFFX-BioC-5_at	51.5	P	0.00141
AFFX-BioC-3_at	47	P	0.000446
AFFX-BioDn-5_at	33.3	P	0.000127
AFFX-BioDn-3_at	330.7	P	0.000044
AFFX-CreX-5_at	492.8	P	0.000044
AFFX-CreX-3_at	811.8	P	0.000044
AFFX-BioB-5_st	3.3	A	0.425962
AFFX-BioB-M_st	2.6	A	0.686277
AFFX-BioB-3_st	1.4	A	0.910522
AFFX-BioC-5_st	1	A	0.963431
AFFX-BioC-3_st	0.9	A	0.760937
AFFX-BioDn-5_st	2.3	A	0.58862
AFFX-BioDn-3_st	4.6	A	0.300606

Total number of rows: 9335

Table truncated, full table size 220 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM34759.CEL.gz	1.9 Mb	(ftp)(http)	CEL
GSM34759.EXP.gz	379 b	(ftp)(http)	EXP