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Sample GSM348287 Query DataSets for GSM348287
Status Public on Mar 06, 2009
Title Human_Chimp_NA15510_Clint
Sample type genomic
 
Channel 1
Source name Human_NA15510
Organism Homo sapiens
Characteristics DNA from Human NA15510
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy3
Label protocol Performed by NimbleGen following company specifications.
 
Channel 2
Source name Chimp_Clint
Organism Pan troglodytes
Characteristics DNA from Chimpanzee Clint
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy5
Label protocol Performed by NimbleGen following company specifications.
 
 
Hybridization protocol Performed by NimbleGen following company specifications.
Scan protocol Performed by NimbleGen following company specifications.
Description Performed by NimbleGen following company specifications.
Data processing Normalization was performed using NimbleScan 2.4. Normalized log2 Cy3/Cy5.
 
Submission date Dec 06, 2008
Last update date Mar 06, 2009
Contact name Tomas Marques-Bonet
URL http://eichlerlab.gs.washington.edu/
Organization name University of Washington
Department Genome Sciences
Lab Evan Eichler
Street address 1705 NE Pacific St,
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL7748
Series (2)
GSE13884 INTER_specific hybs: A Burst of Segmental Duplications in the African Great Ape Ancestor
GSE13934 A Burst of Segmental Duplications in the African Great Ape Ancestor

Data table header descriptions
ID_REF
EXP_129179CB31071_532
REF_129179CB31071_635
RATIO
EXP_NORM
REF_NORM
VALUE Normalized log2 Cy5/Cy3
INV_VALUE Normalized log2 Cy3/Cy5

Data table
ID_REF EXP_129179CB31071_532 REF_129179CB31071_635 RATIO EXP_NORM REF_NORM VALUE INV_VALUE
CHR10FS100175400 9.131 8.992 0.140 9.134 9.067 -0.067 0.067
CHR10FS100175700 11.507 11.725 -0.218 11.477 11.776 0.298 -0.298
CHR10FS100176100 12.384 12.328 0.056 12.356 12.375 0.02 -0.020
CHR10FS100176907 9.852 9.478 0.375 9.849 9.550 -0.299 0.299
CHR10FS100177007 9.112 9.060 0.052 9.114 9.137 0.023 -0.023
CHR10FS100177807 10.269 10.337 -0.069 10.260 10.401 0.141 -0.141
CHR10FS100178207 11.113 11.505 -0.392 11.091 11.557 0.466 -0.466
CHR10FS100178507 9.452 9.870 -0.418 9.454 9.940 0.486 -0.486
CHR10FS100179107 9.545 9.575 -0.030 9.545 9.647 0.102 -0.102
CHR10FS100179807 9.459 9.644 -0.185 9.461 9.715 0.254 -0.254
CHR10FS100180100 10.691 10.526 0.165 10.675 10.588 -0.088 0.088
CHR10FS100180700 10.748 10.758 -0.010 10.732 10.819 0.087 -0.087
CHR10FS100181200 9.855 9.436 0.418 9.851 9.509 -0.342 0.342
CHR10FS100182000 10.604 10.089 0.515 10.590 10.157 -0.433 0.433
CHR10FS100182500 11.205 11.329 -0.124 11.181 11.385 0.204 -0.204
CHR10FS100183100 10.713 10.790 -0.076 10.698 10.851 0.153 -0.153
CHR10FS100183308 10.799 10.777 0.022 10.783 10.838 0.055 -0.055
CHR10FS100183708 10.901 10.751 0.150 10.882 10.812 -0.07 0.070
CHR10FS100184308 9.883 9.912 -0.029 9.879 9.982 0.103 -0.103
CHR10FS100185008 10.650 10.687 -0.036 10.636 10.747 0.112 -0.112

Total number of rows: 385283

Table truncated, full table size 23692 Kbytes.




Supplementary file Size Download File type/resource
GSM348287_532.pair.gz 6.3 Mb (ftp)(http) PAIR
GSM348287_635.pair.gz 6.3 Mb (ftp)(http) PAIR
Processed data included within Sample table

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