NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM348288 Query DataSets for GSM348288
Status Public on Mar 06, 2009
Title Chimp_Human_Clint_NA15510
Sample type genomic
 
Channel 1
Source name Chimp_Clint
Organism Pan troglodytes
Characteristics DNA from Chimpanzee Clint
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy3
Label protocol Performed by NimbleGen following company specifications.
 
Channel 2
Source name Human_NA15510
Organism Homo sapiens
Characteristics DNA from Human NA15510
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy5
Label protocol Performed by NimbleGen following company specifications.
 
 
Hybridization protocol Performed by NimbleGen following company specifications.
Scan protocol Performed by NimbleGen following company specifications.
Description Performed by NimbleGen following company specifications.
Data processing Normalization was performed using NimbleScan 2.4. Normalized log2 Cy3/Cy5.
 
Submission date Dec 06, 2008
Last update date Mar 06, 2009
Contact name Tomas Marques-Bonet
URL http://eichlerlab.gs.washington.edu/
Organization name University of Washington
Department Genome Sciences
Lab Evan Eichler
Street address 1705 NE Pacific St,
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL7748
Series (2)
GSE13884 INTER_specific hybs: A Burst of Segmental Duplications in the African Great Ape Ancestor
GSE13934 A Burst of Segmental Duplications in the African Great Ape Ancestor

Data table header descriptions
ID_REF
EXP_130906CB29073_532
REF_130906CB29073_635
RATIO
EXP_NORM
REF_NORM
VALUE Normalized log2 Cy3/Cy5

Data table
ID_REF EXP_130906CB29073_532 REF_130906CB29073_635 RATIO EXP_NORM REF_NORM VALUE
CHR10FS100175400 9.533 9.436 0.097 9.493 9.550 -0.057
CHR10FS100175700 10.318 10.012 0.306 10.288 10.099 0.189
CHR10FS100176100 11.378 10.879 0.499 11.360 10.932 0.427
CHR10FS100176907 9.376 8.978 0.399 9.341 9.097 0.244
CHR10FS100177007 9.915 9.596 0.320 9.881 9.700 0.180
CHR10FS100177807 11.913 11.240 0.673 11.889 11.282 0.608
CHR10FS100178207 10.197 9.884 0.313 10.168 9.975 0.193
CHR10FS100178507 10.976 10.504 0.473 10.954 10.572 0.382
CHR10FS100179107 9.146 8.703 0.443 9.132 8.784 0.348
CHR10FS100179807 10.622 9.972 0.650 10.597 10.060 0.537
CHR10FS100180100 10.610 10.682 -0.071 10.585 10.745 -0.160
CHR10FS100180700 9.366 9.252 0.115 9.332 9.375 -0.043
CHR10FS100181200 9.653 9.528 0.125 9.612 9.637 -0.025
CHR10FS100182000 10.260 10.730 -0.470 10.229 10.790 -0.561
CHR10FS100182500 10.466 10.073 0.392 10.435 10.158 0.277
CHR10FS100183100 10.407 10.518 -0.111 10.378 10.587 -0.209
CHR10FS100183308 10.155 9.782 0.373 10.125 9.879 0.246
CHR10FS100183708 10.060 9.570 0.489 10.027 9.676 0.351
CHR10FS100184308 10.009 9.914 0.095 9.976 10.003 -0.028
CHR10FS100185008 11.161 10.647 0.513 11.139 10.711 0.428

Total number of rows: 385283

Table truncated, full table size 21183 Kbytes.




Supplementary file Size Download File type/resource
GSM348288_532.pair.gz 6.3 Mb (ftp)(http) PAIR
GSM348288_635.pair.gz 6.3 Mb (ftp)(http) PAIR
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap