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Sample GSM348290 Query DataSets for GSM348290
Status Public on Mar 06, 2009
Title Chimp_Human_Katie_NA15510
Sample type genomic
 
Channel 1
Source name Chimp_Katie
Organism Pan troglodytes
Characteristics DNA from Chimpanzee Katie
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy3
Label protocol Performed by NimbleGen following company specifications.
 
Channel 2
Source name Human_NA15510
Organism Homo sapiens
Characteristics DNA from Human NA15510
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy5
Label protocol Performed by NimbleGen following company specifications.
 
 
Hybridization protocol Performed by NimbleGen following company specifications.
Scan protocol Performed by NimbleGen following company specifications.
Description Performed by NimbleGen following company specifications.
Data processing Normalization was performed using NimbleScan 2.4. Normalized log2 Cy3/Cy5.
 
Submission date Dec 06, 2008
Last update date Mar 06, 2009
Contact name Tomas Marques-Bonet
URL http://eichlerlab.gs.washington.edu/
Organization name University of Washington
Department Genome Sciences
Lab Evan Eichler
Street address 1705 NE Pacific St,
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL7748
Series (2)
GSE13884 INTER_specific hybs: A Burst of Segmental Duplications in the African Great Ape Ancestor
GSE13934 A Burst of Segmental Duplications in the African Great Ape Ancestor

Data table header descriptions
ID_REF
EXP_195438CB06083_532
REF_195438CB06083_635
RATIO
EXP_NORM
REF_NORM
VALUE Normalized log2 Cy3/Cy5

Data table
ID_REF EXP_195438CB06083_532 REF_195438CB06083_635 RATIO EXP_NORM REF_NORM VALUE
CHR10FS100175400 9.861 8.783 1.079 9.468 9.480 -0.012
CHR10FS100175700 11.045 11.401 -0.356 10.938 11.474 -0.536
CHR10FS100176100 11.356 10.851 0.505 11.295 11.003 0.292
CHR10FS100176907 10.459 10.939 -0.481 10.229 11.078 -0.849
CHR10FS100177007 10.234 9.181 1.053 9.946 9.738 0.209
CHR10FS100177807 11.250 10.674 0.576 11.176 10.857 0.319
CHR10FS100178207 10.634 10.205 0.428 10.443 10.482 -0.039
CHR10FS100178507 10.414 9.640 0.774 10.174 10.057 0.117
CHR10FS100179107 10.175 9.455 0.721 9.872 9.924 -0.052
CHR10FS100179807 10.283 9.413 0.870 10.009 9.895 0.114
CHR10FS100180100 10.542 10.365 0.177 10.332 10.609 -0.277
CHR10FS100180700 10.625 9.726 0.899 10.433 10.121 0.312
CHR10FS100181200 10.097 10.083 0.013 9.773 10.390 -0.617
CHR10FS100182000 10.262 10.356 -0.093 9.982 10.601 -0.619
CHR10FS100182500 11.606 10.951 0.655 11.575 11.088 0.487
CHR10FS100183100 10.962 11.158 -0.196 10.841 11.262 -0.421
CHR10FS100183308 11.315 11.546 -0.231 11.249 11.600 -0.351
CHR10FS100183708 11.055 10.756 0.299 10.950 10.925 0.025
CHR10FS100184308 11.207 11.148 0.059 11.127 11.254 -0.127
CHR10FS100185008 11.077 10.975 0.102 10.975 11.109 -0.134

Total number of rows: 385283

Table truncated, full table size 21378 Kbytes.




Supplementary file Size Download File type/resource
GSM348290_532.pair.gz 6.3 Mb (ftp)(http) PAIR
GSM348290_635.pair.gz 6.3 Mb (ftp)(http) PAIR
Processed data included within Sample table

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