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Sample GSM348292 Query DataSets for GSM348292
Status Public on Mar 06, 2009
Title Chimp_Human_PR00238_NA15510
Sample type genomic
 
Channel 1
Source name Chimp_PR00238
Organism Pan troglodytes
Characteristics DNA from Chimpanzee PR00238
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy3
Label protocol Performed by NimbleGen following company specifications.
 
Channel 2
Source name Human_NA15510
Organism Homo sapiens
Characteristics DNA from Human NA15510
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy5
Label protocol Performed by NimbleGen following company specifications.
 
 
Hybridization protocol Performed by NimbleGen following company specifications.
Scan protocol Performed by NimbleGen following company specifications.
Description Performed by NimbleGen following company specifications.
Data processing Normalization was performed using NimbleScan 2.4. Normalized log2 Cy3/Cy5.
 
Submission date Dec 06, 2008
Last update date Mar 06, 2009
Contact name Tomas Marques-Bonet
URL http://eichlerlab.gs.washington.edu/
Organization name University of Washington
Department Genome Sciences
Lab Evan Eichler
Street address 1705 NE Pacific St,
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL7748
Series (2)
GSE13884 INTER_specific hybs: A Burst of Segmental Duplications in the African Great Ape Ancestor
GSE13934 A Burst of Segmental Duplications in the African Great Ape Ancestor

Data table header descriptions
ID_REF
EXP_130658CB38074_532
REF_130658CB38074_635
RATIO
EXP_NORM
REF_NORM
VALUE Normalized log2 Cy3/Cy5

Data table
ID_REF EXP_130658CB38074_532 REF_130658CB38074_635 RATIO EXP_NORM REF_NORM VALUE
CHR10FS100175400 9.283 7.827 1.455 8.955 8.649 0.306
CHR10FS100175700 11.155 10.202 0.953 11.102 10.400 0.702
CHR10FS100176100 11.568 10.767 0.801 11.532 10.887 0.645
CHR10FS100176907 9.914 8.537 1.376 9.751 9.094 0.657
CHR10FS100177007 9.746 8.634 1.111 9.557 9.160 0.397
CHR10FS100177807 11.825 10.968 0.857 11.800 11.067 0.733
CHR10FS100178207 10.024 8.985 1.039 9.876 9.412 0.464
CHR10FS100178507 10.322 9.521 0.801 10.204 9.829 0.376
CHR10FS100179107 9.368 8.018 1.350 9.075 8.763 0.312
CHR10FS100179807 10.418 9.536 0.882 10.311 9.841 0.470
CHR10FS100180100 10.124 10.423 -0.298 9.988 10.590 -0.602
CHR10FS100180700 10.139 10.030 0.109 10.004 10.250 -0.247
CHR10FS100181200 9.504 9.263 0.241 9.261 9.626 -0.365
CHR10FS100182000 9.475 9.811 -0.335 9.223 10.067 -0.844
CHR10FS100182500 10.754 10.307 0.447 10.673 10.490 0.183
CHR10FS100183100 10.719 10.861 -0.142 10.635 10.971 -0.335
CHR10FS100183308 10.543 10.217 0.326 10.446 10.412 0.034
CHR10FS100183708 9.709 8.743 0.966 9.514 9.237 0.277
CHR10FS100184308 11.429 10.745 0.685 11.388 10.868 0.520
CHR10FS100185008 11.636 10.965 0.671 11.603 11.064 0.539

Total number of rows: 385283

Table truncated, full table size 21065 Kbytes.




Supplementary file Size Download File type/resource
GSM348292_532.pair.gz 6.3 Mb (ftp)(http) PAIR
GSM348292_635.pair.gz 6.3 Mb (ftp)(http) PAIR
Processed data included within Sample table

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