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Sample GSM348293 Query DataSets for GSM348293
Status Public on Mar 06, 2009
Title Human_Bonobo_NA15510_LB502
Sample type genomic
 
Channel 1
Source name Human_NA15510
Organism Homo sapiens
Characteristics DNA from Human NA15510
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy3
Label protocol Performed by NimbleGen following company specifications.
 
Channel 2
Source name Bonobo_LB502
Organism Pan paniscus
Characteristics DNA from Bonobo LB502
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy5
Label protocol Performed by NimbleGen following company specifications.
 
 
Hybridization protocol Performed by NimbleGen following company specifications.
Scan protocol Performed by NimbleGen following company specifications.
Description Performed by NimbleGen following company specifications.
Data processing Normalization was performed using NimbleScan 2.4. Normalized log2 Cy3/Cy5.
 
Submission date Dec 06, 2008
Last update date Mar 06, 2009
Contact name Tomas Marques-Bonet
URL http://eichlerlab.gs.washington.edu/
Organization name University of Washington
Department Genome Sciences
Lab Evan Eichler
Street address 1705 NE Pacific St,
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL7748
Series (2)
GSE13884 INTER_specific hybs: A Burst of Segmental Duplications in the African Great Ape Ancestor
GSE13934 A Burst of Segmental Duplications in the African Great Ape Ancestor

Data table header descriptions
ID_REF
EXP_127846CB45071_532
REF_127846CB45071_635
RATIO
EXP_NORM
REF_NORM
VALUE Normalized log2 Cy5/Cy3
INV_VALUE Normalized log2 Cy3/Cy5

Data table
ID_REF EXP_127846CB45071_532 REF_127846CB45071_635 RATIO EXP_NORM REF_NORM VALUE INV_VALUE
CHR10FS100175400 8.067 8.303 -0.237 8.140 8.479 0.339 -0.339
CHR10FS100175700 10.315 10.103 0.211 10.352 10.178 -0.174 0.174
CHR10FS100176100 10.966 11.301 -0.336 10.996 11.335 0.339 -0.339
CHR10FS100176907 9.700 9.740 -0.040 9.743 9.827 0.084 -0.084
CHR10FS100177007 8.807 9.167 -0.360 8.861 9.281 0.42 -0.420
CHR10FS100177807 10.553 11.151 -0.598 10.588 11.190 0.601 -0.601
CHR10FS100178207 8.747 9.477 -0.729 8.802 9.572 0.77 -0.770
CHR10FS100178507 9.432 9.523 -0.091 9.477 9.617 0.14 -0.140
CHR10FS100179107 9.241 9.696 -0.455 9.290 9.784 0.494 -0.494
CHR10FS100179807 9.561 9.782 -0.221 9.607 9.868 0.261 -0.261
CHR10FS100180100 10.296 10.433 -0.137 10.333 10.495 0.161 -0.161
CHR10FS100180700 9.895 9.551 0.345 9.938 9.644 -0.295 0.295
CHR10FS100181200 10.041 9.443 0.597 10.082 9.541 -0.541 0.541
CHR10FS100182000 10.564 10.045 0.519 10.599 10.122 -0.477 0.477
CHR10FS100182500 11.462 11.328 0.134 11.491 11.360 -0.131 0.131
CHR10FS100183100 11.281 11.555 -0.274 11.310 11.578 0.268 -0.268
CHR10FS100183308 10.864 11.087 -0.223 10.894 11.131 0.237 -0.237
CHR10FS100183708 9.370 9.845 -0.475 9.415 9.929 0.513 -0.513
CHR10FS100184308 10.614 11.270 -0.656 10.649 11.305 0.657 -0.657
CHR10FS100185008 11.098 11.470 -0.372 11.129 11.496 0.367 -0.367

Total number of rows: 385283

Table truncated, full table size 23697 Kbytes.




Supplementary file Size Download File type/resource
GSM348293_532.pair.gz 6.3 Mb (ftp)(http) PAIR
GSM348293_635.pair.gz 6.3 Mb (ftp)(http) PAIR
Processed data included within Sample table

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