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Sample GSM348299 Query DataSets for GSM348299
Status Public on Mar 06, 2009
Title Human_Gorilla_NA15510_Kowali
Sample type genomic
 
Channel 1
Source name Human_NA15510
Organism Homo sapiens
Characteristics DNA from Human NA15510
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy3
Label protocol Performed by NimbleGen following company specifications.
 
Channel 2
Source name Gorilla_Kowali
Organism Gorilla gorilla
Characteristics DNA from Gorilla Kowali
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy5
Label protocol Performed by NimbleGen following company specifications.
 
 
Hybridization protocol Performed by NimbleGen following company specifications.
Scan protocol Performed by NimbleGen following company specifications.
Description Performed by NimbleGen following company specifications.
Data processing Normalization was performed using NimbleScan 2.4. Normalized log2 Cy3/Cy5.
 
Submission date Dec 06, 2008
Last update date Mar 06, 2009
Contact name Tomas Marques-Bonet
URL http://eichlerlab.gs.washington.edu/
Organization name University of Washington
Department Genome Sciences
Lab Evan Eichler
Street address 1705 NE Pacific St,
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL7748
Series (2)
GSE13884 INTER_specific hybs: A Burst of Segmental Duplications in the African Great Ape Ancestor
GSE13934 A Burst of Segmental Duplications in the African Great Ape Ancestor

Data table header descriptions
ID_REF
EXP_145602CB51072_532
REF_145602CB51072_635
RATIO
EXP_NORM
REF_NORM
VALUE Normalized log2 Cy5/Cy3
INV_VALUE Normalized log2 Cy3/Cy5

Data table
ID_REF EXP_145602CB51072_532 REF_145602CB51072_635 RATIO EXP_NORM REF_NORM VALUE INV_VALUE
CHR10FS100175400 8.092 7.778 0.313 7.928 8.201 0.273 -0.273
CHR10FS100175700 10.641 11.268 -0.626 10.570 11.400 0.83 -0.830
CHR10FS100176100 10.211 9.237 0.974 10.141 9.474 -0.667 0.667
CHR10FS100176907 10.390 9.627 0.763 10.320 9.833 -0.488 0.488
CHR10FS100177007 8.835 8.988 -0.152 8.722 9.247 0.524 -0.524
CHR10FS100177807 10.881 11.419 -0.538 10.809 11.548 0.738 -0.738
CHR10FS100178207 9.205 9.280 -0.075 9.115 9.513 0.398 -0.398
CHR10FS100178507 9.753 10.180 -0.427 9.678 10.357 0.679 -0.679
CHR10FS100179107 9.340 9.495 -0.155 9.254 9.711 0.456 -0.456
CHR10FS100179807 10.003 10.357 -0.354 9.933 10.525 0.592 -0.592
CHR10FS100180100 10.108 9.870 0.238 10.038 10.061 0.023 -0.023
CHR10FS100180700 9.693 9.861 -0.168 9.617 10.053 0.435 -0.435
CHR10FS100181200 9.945 10.215 -0.270 9.875 10.390 0.516 -0.516
CHR10FS100182000 10.129 9.812 0.317 10.058 10.007 -0.052 0.052
CHR10FS100182500 11.144 11.134 0.010 11.067 11.272 0.205 -0.205
CHR10FS100183100 11.367 11.121 0.246 11.287 11.260 -0.027 0.027
CHR10FS100183308 10.857 11.419 -0.563 10.785 11.548 0.764 -0.764
CHR10FS100183708 9.340 9.485 -0.145 9.254 9.701 0.447 -0.447
CHR10FS100184308 10.839 10.880 -0.040 10.767 11.028 0.26 -0.260
CHR10FS100185008 10.908 11.763 -0.855 10.836 11.879 1.044 -1.044

Total number of rows: 385283

Table truncated, full table size 23544 Kbytes.




Supplementary file Size Download File type/resource
GSM348299_532.pair.gz 6.3 Mb (ftp)(http) PAIR
GSM348299_635.pair.gz 6.3 Mb (ftp)(http) PAIR
Processed data included within Sample table

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