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Sample GSM348303 Query DataSets for GSM348303
Status Public on Mar 06, 2009
Title Gorilla_Human_Kowali_NA15510
Sample type genomic
 
Channel 1
Source name Gorilla_Kowali
Organism Gorilla gorilla
Characteristics DNA from Gorilla Kowali
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy3
Label protocol Performed by NimbleGen following company specifications.
 
Channel 2
Source name Human_NA15510
Organism Homo sapiens
Characteristics DNA from Human NA15510
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy5
Label protocol Performed by NimbleGen following company specifications.
 
 
Hybridization protocol Performed by NimbleGen following company specifications.
Scan protocol Performed by NimbleGen following company specifications.
Description Performed by NimbleGen following company specifications.
Data processing Normalization was performed using NimbleScan 2.4. Normalized log2 Cy3/Cy5.
 
Submission date Dec 07, 2008
Last update date Mar 06, 2009
Contact name Tomas Marques-Bonet
URL http://eichlerlab.gs.washington.edu/
Organization name University of Washington
Department Genome Sciences
Lab Evan Eichler
Street address 1705 NE Pacific St,
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL7748
Series (2)
GSE13884 INTER_specific hybs: A Burst of Segmental Duplications in the African Great Ape Ancestor
GSE13934 A Burst of Segmental Duplications in the African Great Ape Ancestor

Data table header descriptions
ID_REF
EXP_130896CB41071_532
REF_130896CB41071_635
RATIO
EXP_NORM
REF_NORM
VALUE Normalized log2 Cy3/Cy5

Data table
ID_REF EXP_130896CB41071_532 REF_130896CB41071_635 RATIO EXP_NORM REF_NORM VALUE
CHR10FS100175400 8.532 8.708 -0.176 8.627 8.776 -0.149
CHR10FS100175700 10.758 10.367 0.391 10.806 10.409 0.397
CHR10FS100176100 10.883 11.017 -0.134 10.926 11.045 -0.119
CHR10FS100176907 10.265 10.297 -0.032 10.318 10.341 -0.023
CHR10FS100177007 9.759 8.987 0.771 9.820 9.051 0.769
CHR10FS100177807 11.508 10.694 0.815 11.542 10.730 0.812
CHR10FS100178207 9.639 9.312 0.327 9.706 9.371 0.334
CHR10FS100178507 10.293 9.971 0.323 10.346 10.019 0.326
CHR10FS100179107 9.497 9.141 0.355 9.565 9.203 0.362
CHR10FS100179807 10.011 9.190 0.822 10.068 9.250 0.818
CHR10FS100180100 10.464 10.303 0.161 10.512 10.346 0.165
CHR10FS100180700 10.653 10.336 0.317 10.702 10.378 0.324
CHR10FS100181200 10.139 9.729 0.409 10.194 9.784 0.410
CHR10FS100182000 10.406 10.520 -0.115 10.456 10.560 -0.104
CHR10FS100182500 11.696 11.670 0.026 11.729 11.688 0.041
CHR10FS100183100 11.557 10.965 0.592 11.590 10.994 0.596
CHR10FS100183308 11.547 11.101 0.446 11.580 11.127 0.453
CHR10FS100183708 10.496 9.785 0.711 10.544 9.838 0.706
CHR10FS100184308 10.075 9.862 0.213 10.132 9.913 0.219
CHR10FS100185008 11.630 10.728 0.902 11.665 10.764 0.901

Total number of rows: 385283

Table truncated, full table size 21264 Kbytes.




Supplementary file Size Download File type/resource
GSM348303_532.pair.gz 6.3 Mb (ftp)(http) PAIR
GSM348303_635.pair.gz 6.3 Mb (ftp)(http) PAIR
Processed data included within Sample table

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