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Sample GSM348309 Query DataSets for GSM348309
Status Public on Mar 06, 2009
Title Human_Gorilla_NA15510_Makari
Sample type genomic
 
Channel 1
Source name Human_NA15510
Organism Homo sapiens
Characteristics DNA from Human NA15510
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy3
Label protocol Performed by NimbleGen following company specifications.
 
Channel 2
Source name Gorilla_Makari
Organism Gorilla gorilla
Characteristics DNA from Gorilla Makari
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy5
Label protocol Performed by NimbleGen following company specifications.
 
 
Hybridization protocol Performed by NimbleGen following company specifications.
Scan protocol Performed by NimbleGen following company specifications.
Description Performed by NimbleGen following company specifications.
Data processing Normalization was performed using NimbleScan 2.4. Normalized log2 Cy3/Cy5.
 
Submission date Dec 07, 2008
Last update date Mar 06, 2009
Contact name Tomas Marques-Bonet
URL http://eichlerlab.gs.washington.edu/
Organization name University of Washington
Department Genome Sciences
Lab Evan Eichler
Street address 1705 NE Pacific St,
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL7748
Series (2)
GSE13884 INTER_specific hybs: A Burst of Segmental Duplications in the African Great Ape Ancestor
GSE13934 A Burst of Segmental Duplications in the African Great Ape Ancestor

Data table header descriptions
ID_REF
EXP_149049CB06085_532
REF_149049CB06085_635
RATIO
EXP_NORM
REF_NORM
VALUE Normalized log2 Cy5/Cy3
INV_VALUE Normalized log2 Cy3/Cy5

Data table
ID_REF EXP_149049CB06085_532 REF_149049CB06085_635 RATIO EXP_NORM REF_NORM VALUE INV_VALUE
CHR10FS100175400 9.517 9.378 0.140 9.441 9.551 0.11 -0.110
CHR10FS100175700 10.749 10.659 0.090 10.687 10.787 0.099 -0.099
CHR10FS100176100 11.757 11.582 0.175 11.695 11.683 -0.012 0.012
CHR10FS100176907 10.072 10.057 0.015 10.008 10.204 0.195 -0.195
CHR10FS100177007 9.464 9.275 0.189 9.387 9.454 0.067 -0.067
CHR10FS100177807 11.164 11.470 -0.306 11.100 11.576 0.476 -0.476
CHR10FS100178207 10.054 10.187 -0.133 9.990 10.330 0.34 -0.340
CHR10FS100178507 9.809 9.772 0.037 9.741 9.930 0.189 -0.189
CHR10FS100179107 9.676 9.594 0.082 9.603 9.762 0.159 -0.159
CHR10FS100179807 9.460 9.458 0.002 9.383 9.629 0.247 -0.247
CHR10FS100180100 10.661 10.444 0.218 10.601 10.578 -0.023 0.023
CHR10FS100180700 10.559 10.607 -0.048 10.497 10.737 0.24 -0.240
CHR10FS100181200 9.957 10.351 -0.394 9.891 10.487 0.596 -0.596
CHR10FS100182000 10.846 10.755 0.091 10.782 10.880 0.098 -0.098
CHR10FS100182500 11.450 11.680 -0.230 11.386 11.778 0.392 -0.392
CHR10FS100183100 10.934 11.001 -0.067 10.872 11.120 0.248 -0.248
CHR10FS100183308 11.377 11.696 -0.319 11.314 11.794 0.48 -0.480
CHR10FS100183708 10.886 10.982 -0.096 10.822 11.101 0.28 -0.280
CHR10FS100184308 10.321 10.095 0.226 10.259 10.241 -0.017 0.017
CHR10FS100185008 11.182 11.930 -0.748 11.118 12.021 0.903 -0.903

Total number of rows: 385283

Table truncated, full table size 23668 Kbytes.




Supplementary file Size Download File type/resource
GSM348309_532.pair.gz 6.3 Mb (ftp)(http) PAIR
GSM348309_635.pair.gz 6.3 Mb (ftp)(http) PAIR
Processed data included within Sample table

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