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Sample GSM349105 Query DataSets for GSM349105
Status Public on Mar 06, 2009
Title Human_Human_NA18507_NA15510
Sample type genomic
 
Channel 1
Source name Human_NA18507
Organism Homo sapiens
Characteristics DNA from Human NA18507
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy3
Label protocol Performed by NimbleGen following company specifications.
 
Channel 2
Source name Human_NA15510
Organism Homo sapiens
Characteristics DNA from Human NA15510
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy5
Label protocol Performed by NimbleGen following company specifications.
 
 
Hybridization protocol Performed by NimbleGen following company specifications.
Scan protocol Performed by NimbleGen following company specifications.
Description Performed by NimbleGen following company specifications.
Data processing Normalization was performed using NimbleScan 2.4. Normalized log2 Cy3/Cy5.
 
Submission date Dec 08, 2008
Last update date Mar 06, 2009
Contact name Tomas Marques-Bonet
URL http://eichlerlab.gs.washington.edu/
Organization name University of Washington
Department Genome Sciences
Lab Evan Eichler
Street address 1705 NE Pacific St,
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL7748
Series (2)
GSE13885 INTRA_specific hybs: A Burst of Segmental Duplications in the African Great Ape Ancestor
GSE13934 A Burst of Segmental Duplications in the African Great Ape Ancestor

Data table header descriptions
ID_REF
EXP_149045CB01082_532
REF_149045CB01082_635
RATIO
EXP_NORM
REF_NORM
VALUE Normalized log2 Cy3/Cy5

Data table
ID_REF EXP_149045CB01082_532 REF_149045CB01082_635 RATIO EXP_NORM REF_NORM VALUE
CHR10FS100175400 9.863 8.935 0.928 9.579 9.397 0.181
CHR10FS100175700 11.567 11.888 -0.321 11.531 11.903 -0.373
CHR10FS100176100 11.972 11.613 0.359 11.967 11.651 0.316
CHR10FS100176907 11.468 11.170 0.297 11.422 11.248 0.175
CHR10FS100177007 10.468 9.458 1.010 10.299 9.796 0.503
CHR10FS100177807 11.893 11.897 -0.003 11.884 11.912 -0.028
CHR10FS100178207 10.680 10.409 0.271 10.543 10.578 -0.035
CHR10FS100178507 10.956 10.643 0.314 10.857 10.779 0.078
CHR10FS100179107 10.557 9.843 0.715 10.400 10.102 0.298
CHR10FS100179807 10.891 10.563 0.327 10.782 10.711 0.071
CHR10FS100180100 11.408 11.162 0.247 11.357 11.240 0.117
CHR10FS100180700 11.143 10.885 0.258 11.064 10.993 0.071
CHR10FS100181200 10.918 10.818 0.100 10.812 10.935 -0.122
CHR10FS100182000 11.446 11.071 0.375 11.398 11.159 0.240
CHR10FS100182500 12.113 12.099 0.014 12.115 12.102 0.013
CHR10FS100183100 12.034 12.370 -0.336 12.033 12.358 -0.326
CHR10FS100183308 11.927 12.014 -0.087 11.919 12.023 -0.104
CHR10FS100183708 11.152 10.587 0.565 11.074 10.731 0.343
CHR10FS100184308 11.750 11.563 0.186 11.728 11.605 0.123
CHR10FS100185008 11.980 11.830 0.150 11.975 11.851 0.125

Total number of rows: 385283

Table truncated, full table size 21568 Kbytes.




Supplementary file Size Download File type/resource
GSM349105_532.pair.gz 6.4 Mb (ftp)(http) PAIR
GSM349105_635.pair.gz 6.4 Mb (ftp)(http) PAIR
Processed data included within Sample table
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