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Sample GSM349596 Query DataSets for GSM349596
Status Public on Mar 06, 2009
Title Chimp_Chimp_PR00496_Clint
Sample type genomic
 
Channel 1
Source name Chimp_PR00496
Organism Pan troglodytes
Characteristics DNA from Chimpanzee PR00496
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy3
Label protocol Performed by NimbleGen following company specifications.
 
Channel 2
Source name Chimp_Clint
Organism Pan troglodytes
Characteristics DNA from Chimpanzee Clint
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy5
Label protocol Performed by NimbleGen following company specifications.
 
 
Hybridization protocol Performed by NimbleGen following company specifications.
Scan protocol Performed by NimbleGen following company specifications.
Description Performed by NimbleGen following company specifications.
Data processing Normalization was performed using NimbleScan 2.4. Normalized log2 Cy3/Cy5.
 
Submission date Dec 08, 2008
Last update date Mar 06, 2009
Contact name Tomas Marques-Bonet
URL http://eichlerlab.gs.washington.edu/
Organization name University of Washington
Department Genome Sciences
Lab Evan Eichler
Street address 1705 NE Pacific St,
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL7748
Series (2)
GSE13885 INTRA_specific hybs: A Burst of Segmental Duplications in the African Great Ape Ancestor
GSE13934 A Burst of Segmental Duplications in the African Great Ape Ancestor

Data table header descriptions
ID_REF
EXP_148292CB16082_532
REF_148292CB16082_635
RATIO
EXP_NORM
REF_NORM
VALUE Normalized log2 Cy3/Cy5

Data table
ID_REF EXP_148292CB16082_532 REF_148292CB16082_635 RATIO EXP_NORM REF_NORM VALUE
CHR10FS100175400 9.127 8.121 1.005 8.808 8.615 0.194
CHR10FS100175700 11.350 10.041 1.308 11.257 10.276 0.981
CHR10FS100176100 10.724 10.514 0.209 10.574 10.694 -0.121
CHR10FS100176907 10.416 9.617 0.799 10.239 9.905 0.334
CHR10FS100177007 9.394 8.931 0.462 9.101 9.311 -0.211
CHR10FS100177807 11.336 11.415 -0.080 11.242 11.504 -0.262
CHR10FS100178207 9.553 9.438 0.115 9.277 9.751 -0.474
CHR10FS100178507 10.005 9.653 0.352 9.781 9.936 -0.155
CHR10FS100179107 9.613 8.649 0.964 9.345 9.067 0.278
CHR10FS100179807 10.179 9.483 0.696 9.974 9.790 0.185
CHR10FS100180100 10.028 9.546 0.482 9.806 9.844 -0.038
CHR10FS100180700 10.206 9.638 0.568 10.005 9.923 0.082
CHR10FS100181200 9.221 8.546 0.674 8.911 8.978 -0.067
CHR10FS100182000 9.113 8.325 0.788 8.793 8.777 0.016
CHR10FS100182500 10.813 10.185 0.628 10.670 10.402 0.268
CHR10FS100183100 10.766 10.219 0.547 10.619 10.432 0.187
CHR10FS100183308 10.622 10.747 -0.125 10.463 10.902 -0.439
CHR10FS100183708 9.519 8.666 0.853 9.239 9.081 0.158
CHR10FS100184308 10.450 10.533 -0.083 10.277 10.711 -0.434
CHR10FS100185008 11.359 11.123 0.236 11.267 11.240 0.027

Total number of rows: 385283

Table truncated, full table size 20912 Kbytes.




Supplementary file Size Download File type/resource
GSM349596_532.pair.gz 6.3 Mb (ftp)(http) PAIR
GSM349596_635.pair.gz 6.3 Mb (ftp)(http) PAIR
Processed data included within Sample table

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