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Sample GSM349724 Query DataSets for GSM349724
Status Public on Mar 06, 2009
Title Human_Chimp_NA18507_Clint
Sample type genomic
 
Channel 1
Source name Human_NA18507
Organism Homo sapiens
Characteristics DNA from Human NA18507
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy3
Label protocol Performed by NimbleGen following company specifications.
 
Channel 2
Source name Chimp_Clint
Organism Pan troglodytes
Characteristics DNA from Chimpanzee Clint
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy5
Label protocol Performed by NimbleGen following company specifications.
 
 
Hybridization protocol Performed by NimbleGen following company specifications.
Scan protocol Performed by NimbleGen following company specifications.
Description Performed by NimbleGen following company specifications.
Data processing Normalization was performed using NimbleScan 2.4. Normalized log2 Cy3/Cy5.
 
Submission date Dec 09, 2008
Last update date Mar 06, 2009
Contact name Tomas Marques-Bonet
URL http://eichlerlab.gs.washington.edu/
Organization name University of Washington
Department Genome Sciences
Lab Evan Eichler
Street address 1705 NE Pacific St,
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL7749
Series (2)
GSE13884 INTER_specific hybs: A Burst of Segmental Duplications in the African Great Ape Ancestor
GSE13934 A Burst of Segmental Duplications in the African Great Ape Ancestor

Data table header descriptions
ID_REF
EXP_227560CB400810_532
REF_227560CB400810_635
RATIO
EXP_NORM
REF_NORM
VALUE Normalized log2 Cy5/Cy3
INV_VALUE Normalized log2 Cy3/Cy5

Data table
ID_REF EXP_227560CB400810_532 REF_227560CB400810_635 RATIO EXP_NORM REF_NORM VALUE INV_VALUE
CHR10FS010095100 10.139 8.349 1.790 9.699 9.342 -0.357 0.357
CHR10FS010095500 11.228 11.196 0.032 11.062 11.366 0.303 -0.303
CHR10FS010096000 10.196 8.804 1.392 9.775 9.604 -0.17 0.170
CHR10FS010096450 9.782 7.836 1.945 9.208 9.076 -0.132 0.132
CHR10FS010096850 9.542 7.960 1.582 8.895 9.136 0.242 -0.242
CHR10FS010097550 9.363 7.811 1.552 8.697 9.064 0.367 -0.367
CHR10FS010097950 9.657 7.879 1.779 9.041 9.097 0.056 -0.056
CHR10FS010098950 9.713 7.198 2.515 9.115 8.788 -0.327 0.327
CHR10FS010099400 10.460 9.649 0.811 10.117 10.159 0.041 -0.041
CHR10FS010099850 9.789 8.526 1.263 9.219 9.441 0.223 -0.223
CHR10FS010100250 9.616 8.164 1.452 8.986 9.242 0.256 -0.256
CHR10FS010100750 9.808 8.447 1.361 9.245 9.397 0.152 -0.152
CHR10FS010101100 10.596 10.017 0.579 10.290 10.426 0.135 -0.135
CHR10FS010101550 10.903 12.290 -1.387 10.674 12.292 1.617 -1.617
CHR10FS010102050 10.876 10.578 0.299 10.643 10.859 0.216 -0.216
CHR10FS010102550 10.001 7.959 2.042 9.514 9.136 -0.378 0.378
CHR10FS010102950 10.386 9.696 0.690 10.022 10.191 0.169 -0.169
CHR10FS010103350 11.188 11.183 0.005 11.015 11.355 0.339 -0.339
CHR10FS010103800 9.907 8.992 0.915 9.384 9.720 0.336 -0.336
CHR10FS010104350 10.247 9.257 0.989 9.843 9.891 0.048 -0.048

Total number of rows: 385027

Table truncated, full table size 23440 Kbytes.




Supplementary file Size Download File type/resource
GSM349724_532.pair.gz 6.2 Mb (ftp)(http) PAIR
GSM349724_635.pair.gz 6.1 Mb (ftp)(http) PAIR
Processed data included within Sample table

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