NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM349730 Query DataSets for GSM349730
Status Public on Feb 20, 2009
Title BC2 TC
Sample type RNA
 
Source name T cells
Organism Homo sapiens
Characteristics >95% CD3+ T cells negatively isolated with Dynal kit
Treatment protocol Unstimulated
Extracted molecule total RNA
Extraction protocol RNeasy (Qiagen)
Label Biotin
Label protocol Standard Affymetrix Two Cycle IVT Protocol
 
Hybridization protocol Standard Affymetrix FS450_0001
Scan protocol Affymetrix GeneChip Scanner 7G Plus
Description Additional details provided in accompanying manuscript, BC2 TC
Data processing MAS5/GCOS
 
Submission date Dec 09, 2008
Last update date Aug 28, 2018
Contact name Frank A Middleton
E-mail(s) middletf@upstate.edu
Phone 315-464-7721
Organization name SUNY Upstate Medical Univ
Department Neuroscience and Physiology
Street address 505 Irving Avenue
City Syracuse
State/province NY
ZIP/Postal code 13210
Country USA
 
Platform ID GPL570
Series (1)
GSE13887 Activation of mTOR controls the loss of TCRζ in lupus T cells through HRES-1/Rab4-regulated lysosomal degradation
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE Signal Value
ABS_CALL Present/Absent Call
DETECTION P-VALUE Detection P Value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1412.4 P 0.000753643
AFFX-BioB-M_at 1822.05 P 0.000126798
AFFX-BioB-3_at 958.956 P 4.42873e-05
AFFX-BioC-5_at 3255.27 P 0.000296708
AFFX-BioC-3_at 4101.07 P 4.42873e-05
AFFX-BioDn-5_at 6833.12 P 4.42873e-05
AFFX-BioDn-3_at 15360.8 P 0.000146581
AFFX-CreX-5_at 35979.7 P 5.16732e-05
AFFX-CreX-3_at 46373 P 4.42873e-05
AFFX-DapX-5_at 15.4546 A 0.617401
AFFX-DapX-M_at 92.2461 A 0.382599
AFFX-DapX-3_at 40.8477 A 0.712257
AFFX-LysX-5_at 53.5055 A 0.368438
AFFX-LysX-M_at 23.6889 A 0.699394
AFFX-LysX-3_at 57.0605 A 0.13134
AFFX-PheX-5_at 9.74415 A 0.963431
AFFX-PheX-M_at 20.3486 A 0.868639
AFFX-PheX-3_at 245.955 A 0.165861
AFFX-ThrX-5_at 14.5069 A 0.843268
AFFX-ThrX-M_at 9.89003 A 0.953518

Total number of rows: 54675

Table truncated, full table size 1620 Kbytes.




Supplementary file Size Download File type/resource
GSM349730.CEL.gz 4.5 Mb (ftp)(http) CEL
GSM349730.CHP.gz 297.2 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap