NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM349742 Query DataSets for GSM349742
Status Public on Feb 20, 2009
Title BC5 TC
Sample type RNA
 
Source name T cells
Organism Homo sapiens
Characteristics >95% CD3+ T cells negatively isolated with Dynal kit
Treatment protocol Unstimulated
Extracted molecule total RNA
Extraction protocol RNeasy (Qiagen)
Label Biotin
Label protocol Standard Affymetrix Two Cycle IVT Protocol
 
Hybridization protocol Standard Affymetrix FS450_0001
Scan protocol Affymetrix GeneChip Scanner 7G Plus
Description Additional details provided in accompanying manuscript, BC5 TC
Data processing MAS5/GCOS
 
Submission date Dec 09, 2008
Last update date Aug 28, 2018
Contact name Frank A Middleton
E-mail(s) middletf@upstate.edu
Phone 315-464-7721
Organization name SUNY Upstate Medical Univ
Department Neuroscience and Physiology
Street address 505 Irving Avenue
City Syracuse
State/province NY
ZIP/Postal code 13210
Country USA
 
Platform ID GPL570
Series (1)
GSE13887 Activation of mTOR controls the loss of TCRζ in lupus T cells through HRES-1/Rab4-regulated lysosomal degradation
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE Signal Value
ABS_CALL Present/Absent Call
DETECTION P-VALUE Detection P Value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1429.88 P 0.000662269
AFFX-BioB-M_at 2173.13 P 5.16732e-05
AFFX-BioB-3_at 1274.97 P 5.16732e-05
AFFX-BioC-5_at 3280.56 P 0.000126798
AFFX-BioC-3_at 3033.56 P 4.42873e-05
AFFX-BioDn-5_at 3668.1 P 4.42873e-05
AFFX-BioDn-3_at 15486.4 P 5.16732e-05
AFFX-CreX-5_at 33499.4 P 4.42873e-05
AFFX-CreX-3_at 50862.3 P 4.42873e-05
AFFX-DapX-5_at 6.83799 A 0.455409
AFFX-DapX-M_at 33.0889 A 0.712257
AFFX-DapX-3_at 10.0837 A 0.932322
AFFX-LysX-5_at 51.0676 A 0.227617
AFFX-LysX-M_at 64.4685 A 0.41138
AFFX-LysX-3_at 60.5141 P 0.0200219
AFFX-PheX-5_at 5.02985 A 0.976071
AFFX-PheX-M_at 7.37231 A 0.984817
AFFX-PheX-3_at 24.157 A 0.772364
AFFX-ThrX-5_at 43.9661 A 0.645547
AFFX-ThrX-M_at 13.1866 A 0.772364

Total number of rows: 54675

Table truncated, full table size 1622 Kbytes.




Supplementary file Size Download File type/resource
GSM349742.CEL.gz 4.8 Mb (ftp)(http) CEL
GSM349742.CHP.gz 296.2 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap