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Sample GSM349746 Query DataSets for GSM349746
Status Public on Feb 20, 2009
Title BC9 TC
Sample type RNA
 
Source name T cells
Organism Homo sapiens
Characteristics >95% CD3+ T cells negatively isolated with Dynal kit
Treatment protocol Unstimulated
Extracted molecule total RNA
Extraction protocol RNeasy (Qiagen)
Label Biotin
Label protocol Standard Affymetrix Two Cycle IVT Protocol
 
Hybridization protocol Standard Affymetrix FS450_0001
Scan protocol Affymetrix GeneChip Scanner 7G Plus
Description Additional details provided in accompanying manuscript, BC9 TC
Data processing MAS5/GCOS
 
Submission date Dec 09, 2008
Last update date Aug 28, 2018
Contact name Frank A Middleton
E-mail(s) middletf@upstate.edu
Phone 315-464-7721
Organization name SUNY Upstate Medical Univ
Department Neuroscience and Physiology
Street address 505 Irving Avenue
City Syracuse
State/province NY
ZIP/Postal code 13210
Country USA
 
Platform ID GPL570
Series (1)
GSE13887 Activation of mTOR controls the loss of TCRζ in lupus T cells through HRES-1/Rab4-regulated lysosomal degradation
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE Signal Value
ABS_CALL Present/Absent Call
DETECTION P-VALUE Detection P Value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 6571.33 P 0.000224668
AFFX-BioB-M_at 6516.29 P 5.16732e-05
AFFX-BioB-3_at 3795.07 P 7.00668e-05
AFFX-BioC-5_at 11585.6 P 5.16732e-05
AFFX-BioC-3_at 14693.9 P 4.42873e-05
AFFX-BioDn-5_at 22554.3 P 4.42873e-05
AFFX-BioDn-3_at 49904.9 P 4.42873e-05
AFFX-CreX-5_at 126249 P 4.42873e-05
AFFX-CreX-3_at 173863 P 4.42873e-05
AFFX-DapX-5_at 101.796 A 0.51489
AFFX-DapX-M_at 69.2146 A 0.631562
AFFX-DapX-3_at 16.0366 A 0.99859
AFFX-LysX-5_at 191.942 A 0.205732
AFFX-LysX-M_at 392.204 A 0.275129
AFFX-LysX-3_at 72.2503 A 0.631562
AFFX-PheX-5_at 60.3155 A 0.712257
AFFX-PheX-M_at 149.527 A 0.544587
AFFX-PheX-3_at 145.101 A 0.672921
AFFX-ThrX-5_at 98.3671 A 0.645547
AFFX-ThrX-M_at 83.9557 A 0.860518

Total number of rows: 54675

Table truncated, full table size 1592 Kbytes.




Supplementary file Size Download File type/resource
GSM349746.CEL.gz 4.2 Mb (ftp)(http) CEL
GSM349746.CHP.gz 298.3 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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