|
|
GEO help: Mouse over screen elements for information. |
|
Status |
Public on Dec 07, 2021 |
Title |
BAT2 |
Sample type |
SRA |
|
|
Source name |
Brown Adipose
|
Organism |
Mus musculus |
Characteristics |
tissue: Brown Adipose
|
Extracted molecule |
total RNA |
Extraction protocol |
Adipose tissues were collected, flash frozen on dry ice, and RNA was harvested using Trizol reagent. Illumina TruSeq RNA Sample Prep Kit (Cat#FC-122-1001) was used with 1 ug of total RNA for the construction of sequencing libraries. RNA libraries were prepared for sequencing using standard Illumina protocols
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 2000 |
|
|
Description |
RNA-seq_FPKM.xlsx
|
Data processing |
Reads were aligned to mm10, using Tophat (version tophat-2.0.9) and genes were quantified using Cufflinks (Version 2.1.1) Genome_build: mm10
|
|
|
Submission date |
Dec 07, 2018 |
Last update date |
Dec 07, 2021 |
Contact name |
Lei Sun |
E-mail(s) |
sun.lei@duke-nus.edu.sg
|
Organization name |
Duke-NUS
|
Street address |
8 College Road
|
City |
Singapore |
ZIP/Postal code |
169857 |
Country |
Singapore |
|
|
Platform ID |
GPL13112 |
Series (1) |
GSE123511 |
Identification of a natural beige adipose depot in mice |
|
Relations |
BioSample |
SAMN10534505 |
SRA |
SRX5122764 |
Supplementary data files not provided |
SRA Run Selector |
Raw data are available in SRA |
Processed data are available on Series record |
|
|
|
|
|