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| Status |
Public on Jan 07, 2019 |
| Title |
BCBL1 (induced) |
| Sample type |
SRA |
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| Source name |
B-cell lymphoma
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| Organisms |
Homo sapiens; Human gammaherpesvirus 8 |
| Characteristics |
infection 1: KSHV+
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| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was harvested using Trizol.
1 ug of RNA was input into the Illumina TruSeq RNA Sample Prep Kit v2 (Cat# RS-122-2001) to construct the sequencing libraries.
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 4000 |
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| Description |
RNase R treated
Uninduced
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| Data processing |
Reads were aligned using STAR version 2.5
Backsplice junctions were called using find_circ version 1.2
Genome_build: MM10 + MHV68, HG38 + KSHV, MMUL8.01 + rLCV
Supplementary_files_format_and_content: Backsplice coordinates and counts of RNAse R sequencing data in BED format
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| Submission date |
Jan 06, 2019 |
| Last update date |
Jan 08, 2019 |
| Contact name |
Erik K Flemington |
| E-mail(s) |
eflemin@tulane.edu
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| Phone |
504 988-1167
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| Organization name |
Tulane Health Sciences Center
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| Department |
Pathology
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| Street address |
1430 Tulane Ave., SL79
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| City |
New Orleans |
| State/province |
LA |
| ZIP/Postal code |
70112 |
| Country |
USA |
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| Platform ID |
GPL25719 |
| Series (1) |
| GSE124711 |
Comparative Analysis of Gammaherpesvirus Circular RNA |
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| Relations |
| BioSample |
SAMN10698031 |
| SRA |
SRX5210639 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM3543750_24_KSHV_latent_BCBL1_uninduced_RNaseR_sites.bed.circles.bed.gz |
351.5 Kb |
(ftp)(http) |
BED |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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