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| Status |
Public on Feb 18, 2020 |
| Title |
1001200502_D12 |
| Sample type |
SRA |
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| Source name |
pancreatic islets
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| Organism |
Homo sapiens |
| Characteristics |
cryopreserved: No
diabetes: T2D
Sex: F
patched: FACS
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| Extracted molecule |
total RNA |
| Extraction protocol |
SmartSeq2 (21X-23X PCR cycles)
SmartSeq2 (21X-23X PCR cycles)
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
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| Data processing |
Mapped to Gch38 using STAR
Gene counts using htseq-count
Genome_build: GRCh38
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| Submission date |
Jan 07, 2019 |
| Last update date |
Apr 16, 2020 |
| Contact name |
Joan Camunas-Soler |
| E-mail(s) |
joancs@gmail.com
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| Phone |
6504604767
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| Organization name |
Stanford University
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| Department |
Bioengineering
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| Lab |
Quake Lab
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| Street address |
318 Campus Drive
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| City |
Stanford |
| State/province |
California |
| ZIP/Postal code |
94305 |
| Country |
USA |
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| Platform ID |
GPL18573 |
| Series (1) |
| GSE124742 |
Pancreas single cell patch-seq links physiologic dysfunction in diabetes to transcriptomic phenotypes |
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| Relations |
| BioSample |
SAMN10703809 |
| SRA |
SRX5215390 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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