|
| Status |
Public on Jan 10, 2022 |
| Title |
WT2 |
| Sample type |
SRA |
| |
|
| Source name |
NUGC3
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: NUGC3
cell type: stomach cancer cell line
genotype: wild_type
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Cells were lysed in Trizol reagent and total RNA was extracted.
RNA libraries were prepared for sequencing using standard Illumina protocols
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
HiSeq X Ten |
| |
|
| Data processing |
Sequenced reads were aligned to Ensemble database with STAR.
Gene expression values were normalized to obtain RPKM values using RSEM.
Genome_build: Ensemble
Supplementary_files_format_and_content: tab-delimited text files include RPKM values for each sample .
|
| |
|
| Submission date |
Jan 10, 2019 |
| Last update date |
Jan 10, 2022 |
| Contact name |
Yumin Han |
| E-mail(s) |
hanyumin1990@sjtu.edu.cn
|
| Organization name |
Shanghai Institutes for Biological Sciences
|
| Street address |
320 Yueyang Road
|
| City |
Shanghai |
| ZIP/Postal code |
200031 |
| Country |
China |
| |
|
| Platform ID |
GPL20795 |
| Series (1) |
| GSE124909 |
Transcriptomic profile of MYC wild type and knockdown NUGC3 cells |
|
| Relations |
| BioSample |
SAMN10721858 |
| SRA |
SRX5235408 |
