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Sample GSM3559455 Query DataSets for GSM3559455
Status Public on Jan 01, 2024
Title MEF Spry124 WT repB 60 min
Sample type RNA
 
Source name Immortalized MEF
Organism Mus musculus
Characteristics spry status: Wild-type Spry expression (Spry1,2,4 are floxed/floxed)
culture genotype/variation: Serum Starved (DMEM + 0.2% BSA + 100 U/mL penicillin + 100ug/mL streptomycin)
fgf treatment time (min): 60
rep: B
genotype/variation: WT
Extracted molecule total RNA
Extraction protocol RNA was extracted using the RNeasy Plus Mini Kit (Qiagen), according to manufacturer’s instructions
Label biotin
Label protocol Standard label protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Spry124fl/fl MEFs
Data processing The data were normalized using background subtraction and quantile normalization with Illumina Genome Studio (v 1.9.0)
 
Submission date Jan 10, 2019
Last update date Jan 01, 2024
Contact name Neda Bagheri
E-mail(s) n-bagheri@northwestern.edu
Phone 847-491-2716
Organization name Northwestern University
Department Chemical and Biological Engineering
Street address 2145 Sheridan Road, Tech E154
City Evanston
State/province IL
ZIP/Postal code 60208-3109
Country USA
 
Platform ID GPL6885
Series (1)
GSE124923 Gene expression dynamics reveal Sprouty mediated regulation of Wnt pathway genes

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection
MIN_Signal
MAX_Signal
NARRAYS
ARRAY_STDEV
BEAD_STDEV
Avg_NBEADS

Data table
ID_REF VALUE Detection MIN_Signal MAX_Signal NARRAYS ARRAY_STDEV BEAD_STDEV Avg_NBEADS
ILMN_2896528 470.9 1 470.9 470.9 1 158.026 36
ILMN_2721178 71 1 71 71 1 35.766 24
ILMN_3033922 535 1 535 535 1 164.464 33
ILMN_3092673 2032.5 1 2032.5 2032.5 1 400.156 39
ILMN_2816356 23 0.99248 23 23 1 35.73 33
ILMN_2808939 409.3 1 409.3 409.3 1 178.562 38
ILMN_2634564 556.6 1 556.6 556.6 1 244.222 32
ILMN_2737647 -4.5 0.26692 -4.5 -4.5 1 33.879 40
ILMN_2734484 286.2 1 286.2 286.2 1 130.611 41
ILMN_2952292 95.6 1 95.6 95.6 1 52.086 47
ILMN_2699078 -3.6 0.30576 -3.6 -3.6 1 29.417 45
ILMN_1213681 119.9 1 119.9 119.9 1 72.898 56
ILMN_2735413 1.2 0.55138 1.2 1.2 1 30.347 32
ILMN_2735415 -3.5 0.30702 -3.5 -3.5 1 26.028 27
ILMN_2891688 320.9 1 320.9 320.9 1 109.439 29
ILMN_2637698 640.5 1 640.5 640.5 1 143.894 36
ILMN_2674228 199.9 1 199.9 199.9 1 99.554 44
ILMN_2601546 5.9 0.7807 5.9 5.9 1 31.747 43
ILMN_1230831 -6.2 0.2005 -6.2 -6.2 1 25.155 26
ILMN_2848071 13.3 0.93609 13.3 13.3 1 31.021 27

Total number of rows: 25697

Table truncated, full table size 1170 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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