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Sample GSM3559461 Query DataSets for GSM3559461
Status Public on Jan 01, 2024
Title MEF Spry124 WT repB 120 min
Sample type RNA
 
Source name Immortalized MEF
Organism Mus musculus
Characteristics spry status: Wild-type Spry expression (Spry1,2,4 are floxed/floxed)
culture genotype/variation: Serum Starved (DMEM + 0.2% BSA + 100 U/mL penicillin + 100ug/mL streptomycin)
fgf treatment time (min): 120
rep: B
genotype/variation: WT
Extracted molecule total RNA
Extraction protocol RNA was extracted using the RNeasy Plus Mini Kit (Qiagen), according to manufacturer’s instructions
Label biotin
Label protocol Standard label protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Spry124fl/fl MEFs
Data processing The data were normalized using background subtraction and quantile normalization with Illumina Genome Studio (v 1.9.0)
 
Submission date Jan 10, 2019
Last update date Jan 01, 2024
Contact name Neda Bagheri
E-mail(s) n-bagheri@northwestern.edu
Phone 847-491-2716
Organization name Northwestern University
Department Chemical and Biological Engineering
Street address 2145 Sheridan Road, Tech E154
City Evanston
State/province IL
ZIP/Postal code 60208-3109
Country USA
 
Platform ID GPL6885
Series (1)
GSE124923 Gene expression dynamics reveal Sprouty mediated regulation of Wnt pathway genes

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection
MIN_Signal
MAX_Signal
NARRAYS
ARRAY_STDEV
BEAD_STDEV
Avg_NBEADS

Data table
ID_REF VALUE Detection MIN_Signal MAX_Signal NARRAYS ARRAY_STDEV BEAD_STDEV Avg_NBEADS
ILMN_2896528 399 1 399 399 1 105.825 44
ILMN_2721178 71.6 1 71.6 71.6 1 45.323 43
ILMN_3033922 588.3 1 588.3 588.3 1 170.666 45
ILMN_3092673 2224.3 1 2224.3 2224.3 1 609.376 39
ILMN_2816356 25 0.99624 25 25 1 39.59 44
ILMN_2808939 479.2 1 479.2 479.2 1 182.953 36
ILMN_2634564 482.5 1 482.5 482.5 1 153.69 40
ILMN_2737647 -1.6 0.42481 -1.6 -1.6 1 25.093 37
ILMN_2734484 234.6 1 234.6 234.6 1 90.973 42
ILMN_2952292 98.9 1 98.9 98.9 1 60.265 47
ILMN_2699078 -5.8 0.21679 -5.8 -5.8 1 25.329 37
ILMN_1213681 89 1 89 89 1 51.788 55
ILMN_2735413 -3.9 0.30827 -3.9 -3.9 1 23.068 46
ILMN_2735415 4.1 0.71805 4.1 4.1 1 27.526 35
ILMN_2891688 277.1 1 277.1 277.1 1 99.127 29
ILMN_2637698 706.4 1 706.4 706.4 1 215.489 44
ILMN_2674228 167.2 1 167.2 167.2 1 81.525 47
ILMN_2601546 6.6 0.81203 6.6 6.6 1 29.525 53
ILMN_1230831 -1.4 0.42982 -1.4 -1.4 1 26.378 32
ILMN_2848071 13.2 0.93609 13.2 13.2 1 35.638 37

Total number of rows: 25697

Table truncated, full table size 1171 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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