NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM3559467 Query DataSets for GSM3559467
Status Public on Jan 01, 2024
Title MEF Spry124 WT repB 240 min
Sample type RNA
 
Source name Immortalized MEF
Organism Mus musculus
Characteristics spry status: Wild-type Spry expression (Spry1,2,4 are floxed/floxed)
culture genotype/variation: Serum Starved (DMEM + 0.2% BSA + 100 U/mL penicillin + 100ug/mL streptomycin)
fgf treatment time (min): 240
rep: B
genotype/variation: WT
Extracted molecule total RNA
Extraction protocol RNA was extracted using the RNeasy Plus Mini Kit (Qiagen), according to manufacturer’s instructions
Label biotin
Label protocol Standard label protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Spry124fl/fl MEFs
Data processing The data were normalized using background subtraction and quantile normalization with Illumina Genome Studio (v 1.9.0)
 
Submission date Jan 10, 2019
Last update date Jan 01, 2024
Contact name Neda Bagheri
E-mail(s) n-bagheri@northwestern.edu
Phone 847-491-2716
Organization name Northwestern University
Department Chemical and Biological Engineering
Street address 2145 Sheridan Road, Tech E154
City Evanston
State/province IL
ZIP/Postal code 60208-3109
Country USA
 
Platform ID GPL6885
Series (1)
GSE124923 Gene expression dynamics reveal Sprouty mediated regulation of Wnt pathway genes

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection
MIN_Signal
MAX_Signal
NARRAYS
ARRAY_STDEV
BEAD_STDEV
Avg_NBEADS

Data table
ID_REF VALUE Detection MIN_Signal MAX_Signal NARRAYS ARRAY_STDEV BEAD_STDEV Avg_NBEADS
ILMN_2896528 421.9 1 421.9 421.9 1 115.221 45
ILMN_2721178 79.9 1 79.9 79.9 1 48.922 41
ILMN_3033922 505.5 1 505.5 505.5 1 165.163 43
ILMN_3092673 1920.5 1 1920.5 1920.5 1 454.046 39
ILMN_2816356 19.1 0.9812 19.1 19.1 1 26.177 31
ILMN_2808939 499.5 1 499.5 499.5 1 144.079 34
ILMN_2634564 622.9 1 622.9 622.9 1 250.622 34
ILMN_2737647 -5.6 0.22682 -5.6 -5.6 1 22.301 31
ILMN_2734484 269.9 1 269.9 269.9 1 103.121 43
ILMN_2952292 103.6 1 103.6 103.6 1 33.613 40
ILMN_2699078 3.4 0.66917 3.4 3.4 1 25.337 42
ILMN_1213681 80 1 80 80 1 43.53 36
ILMN_2735413 -0.1 0.48747 -0.1 -0.1 1 24.235 28
ILMN_2735415 -3.5 0.32331 -3.5 -3.5 1 23.738 37
ILMN_2891688 445.7 1 445.7 445.7 1 115.125 38
ILMN_2637698 719.1 1 719.1 719.1 1 250.095 46
ILMN_2674228 168.3 1 168.3 168.3 1 82.652 50
ILMN_2601546 9.4 0.88722 9.4 9.4 1 30.883 44
ILMN_1230831 9.5 0.88722 9.5 9.5 1 33.262 37
ILMN_2848071 16.3 0.96617 16.3 16.3 1 25.421 38

Total number of rows: 25697

Table truncated, full table size 1171 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap