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GEO accession:
Sample GSM3569213
Query DataSets for GSM3569213
Status
Public on Jan 19, 2019
Title
shRNA-216-3
Sample type
RNA
Source name
shRNA-216
Organism
Homo sapiens
Characteristics
cell line: RCH-ACV
genotype/variation: SETDB2 knockdown
Treatment protocol
shRNA transduction by lentivirus
Growth protocol
RPMI
Extracted molecule
total RNA
Extraction protocol
Trizol
Label
biotin
Label protocol
Affymetrix protocol
Hybridization protocol
Affymetrix protocol
Scan protocol
Affymetrix protocol
Data processing
Raw microarray image processing, normalization and expression calling were performed by the R-Bioconductor package affy using RMA function module.
Submission date
Jan 18, 2019
Last update date
Jan 19, 2019
Contact name
Stephen HK WONG
E-mail(s)
honkit@stanford.edu
Phone
6507235340
Organization name
Stanford University
Department
Pathology
Lab
Dr. Michael Cleary
Street address
G2035 SIM1 Bldg
City
Stanford
State/province
California
ZIP/Postal code
94305
Country
USA
Platform ID
GPL16686
Series (2)
GSE125329
Transcriptomic analysis of RCH-ACV cells whose SETDB2 was knocked down by shRNA
GSE125334
SETDB2 links E2A-PBX1 to cell cycle dysregulation in acute leukemia through CDKN2C repression
Data table header descriptions
ID_REF
VALUE
RMA
Data table
ID_REF
VALUE
16650001
2.092253034
16650003
2.87802632
16650005
2.407520298
16650007
1.89421716
16650009
1.388323166
16650011
3.027066275
16650013
4.781542928
16650015
4.994895605
16650017
2.292383617
16650019
3.024195419
16650021
3.180470151
16650023
1.864967185
16650025
4.345989875
16650027
2.014518634
16650029
2.407520298
16650031
3.194931975
16650033
2.745764558
16650035
1.582966464
16650037
1.500904847
16650041
5.458804207
Total number of rows:
53617
Table truncated, full table size
1093 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM3569213_sh-216_3-52078100963255052517426461512097.CEL.gz
7.6 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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