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GEO accession:
Sample GSM3569214
Query DataSets for GSM3569214
Status
Public on Jan 19, 2019
Title
shRNA-LUC_ctr-1
Sample type
RNA
Source name
shRNA-LUC_ctr
Organism
Homo sapiens
Characteristics
cell line: RCH-ACV
genotype/variation: control
Treatment protocol
shRNA transduction by lentivirus
Growth protocol
RPMI
Extracted molecule
total RNA
Extraction protocol
Trizol
Label
biotin
Label protocol
Affymetrix protocol
Hybridization protocol
Affymetrix protocol
Scan protocol
Affymetrix protocol
Data processing
Raw microarray image processing, normalization and expression calling were performed by the R-Bioconductor package affy using RMA function module.
Submission date
Jan 18, 2019
Last update date
Jan 19, 2019
Contact name
Stephen HK WONG
E-mail(s)
honkit@stanford.edu
Phone
6507235340
Organization name
Stanford University
Department
Pathology
Lab
Dr. Michael Cleary
Street address
G2035 SIM1 Bldg
City
Stanford
State/province
California
ZIP/Postal code
94305
Country
USA
Platform ID
GPL16686
Series (2)
GSE125329
Transcriptomic analysis of RCH-ACV cells whose SETDB2 was knocked down by shRNA
GSE125334
SETDB2 links E2A-PBX1 to cell cycle dysregulation in acute leukemia through CDKN2C repression
Data table header descriptions
ID_REF
VALUE
RMA
Data table
ID_REF
VALUE
16650001
1.919855521
16650003
2.517220627
16650005
2.11723347
16650007
2.496493661
16650009
1.806685284
16650011
2.874738316
16650013
5.17688024
16650015
5.211284053
16650017
2.453326251
16650019
3.024195419
16650021
3.366733015
16650023
3.734862662
16650025
3.446980736
16650027
1.261412834
16650029
1.81011587
16650031
4.067783372
16650033
0.813151255
16650035
1.17338409
16650037
1.622883643
16650041
5.440843383
Total number of rows:
53617
Table truncated, full table size
1093 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM3569214_sh-Luc_1-52078100963254052517426461511882.CEL.gz
7.8 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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