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GEO accession:
Sample GSM3633685
Query DataSets for GSM3633685
Status
Public on Mar 02, 2019
Title
WGBS from heart left ventricle (ENCLB439FZB)
Sample type
SRA
Source name
Homo sapiens female adult (51 year) heart left ventricle tissue
Organism
Homo sapiens
Characteristics
tissue_type: heart left ventricle
biomaterial_type: tissue
biosample encode accession: ENCBS053PTB (SAMN10986889)
Sex: female
dev stage: adult
age: 51 year
donor_id: ENCDO271OUW
lab: Richard Myers, HAIB
link: Derived from ENCODE donor ENCDO271OUW;
https://www.encodeproject.org/ENCDO271OUW/
link: ENCBS053PTB at ENCODE;
https://www.encodeproject.org/ENCBS053PTB/
Extracted molecule
genomic DNA
Extraction protocol
general protocol:
https://www.encodeproject.org/documents/9d9cbba0-5ebe-482b-9fa3-d93a968a7045/@@download/attachment/WGBS_V4_protocol.pdf
Library strategy
Bisulfite-Seq
Library source
genomic
Library selection
RANDOM
Instrument model
HiSeq X Ten
Description
https://www.encodeproject.org/experiments/ENCSR307KDA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR307KDA
assay title: WGBS
encode release date: 2018-12-22
lab: Richard Myers, HAIB
library encode accession: ENCLB439FZB
Data processing
See GSM*_README.txt supplementary file linked below
Submission date
Feb 27, 2019
Last update date
Mar 04, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL20795
Series (1)
GSE127294
WGBS from heart left ventricle (ENCSR307KDA)
Relations
BioSample
SAMN10986889
SRA
SRX5457085
Supplementary file
Size
Download
File type/resource
GSM3633685_ENCLB439FZB_README.txt.gz
54 b
(ftp)
(http)
TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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