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Sample GSM3633957

Query DataSets for GSM3633957

Status

Public on Mar 02, 2019

Title

WGBS from spleen (ENCLB845KXJ)

Sample type

SRA

Source name

Homo sapiens female adult (51 year) spleen tissue

Organism

Homo sapiens

Characteristics

tissue_type: spleen
biomaterial_type: tissue
biosample encode accession: ENCBS142WXB (SAMN10986925)
Sex: female
dev stage: adult
age: 51 year
donor_id: ENCDO271OUW
lab: Richard Myers, HAIB
link: Derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/
link: ENCBS142WXB at ENCODE; https://www.encodeproject.org/ENCBS142WXB/

Extracted molecule

genomic DNA

Extraction protocol

general protocol: https://www.encodeproject.org/documents/9d9cbba0-5ebe-482b-9fa3-d93a968a7045/@@download/attachment/WGBS_V4_protocol.pdf

Library strategy

Bisulfite-Seq

Library source

genomic

Library selection

RANDOM

Instrument model

HiSeq X Ten

Description

https://www.encodeproject.org/experiments/ENCSR750CPN/
***************
biological replicate number: 1
technical replicate number: 1
description: WGBS on spleen tissue
experiment encode accession: ENCSR750CPN
assay title: WGBS
assembly: GRCh38
encode release date: 2018-01-22
lab: Richard Myers, HAIB
library encode accession: ENCLB845KXJ

Data processing

See GSM*_README.txt supplementary file linked below

Submission date

Feb 27, 2019

Last update date

Mar 26, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL20795

Series (1)

GSE127312

WGBS from spleen (ENCSR750CPN)

Relations

BioSample

SAMN10986925

SRA

SRX5457104

Named Annotation

GSM3633957_ENCFF865OXJ_signal_GRCh38.bigWig

Supplementary file	Size	Download	File type/resource
GSM3633957_ENCFF441NPK_methylation_state_at_CHG_GRCh38.bed.gz	2.5 Gb	(ftp)(http)	BED
GSM3633957_ENCFF504TND_methylation_state_at_CHH_GRCh38.bigBed	10.9 Gb	(ftp)(http)	BIGBED
GSM3633957_ENCFF550FZT_methylation_state_at_CpG_GRCh38.bed.gz	656.4 Mb	(ftp)(http)	BED
GSM3633957_ENCFF840VTB_methylation_state_at_CpG_GRCh38.bigBed	1.2 Gb	(ftp)(http)	BIGBED
GSM3633957_ENCFF852FGI_methylation_state_at_CHH_GRCh38.bed.gz	8.0 Gb	(ftp)(http)	BED
GSM3633957_ENCFF865OXJ_signal_GRCh38.bigWig	5.3 Gb	(ftp)(http)	BIGWIG
GSM3633957_ENCFF895LVJ_methylation_state_at_CHG_GRCh38.bigBed	4.3 Gb	(ftp)(http)	BIGBED
GSM3633957_ENCLB845KXJ_README.txt.gz	804 b	(ftp)(http)	TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file