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Sample GSM363997 Query DataSets for GSM363997
Status Public on Mar 09, 2009
Title A/J A-J_92-3
Sample type RNA
 
Source name A-J_92-3
Organism Mus musculus
Characteristics Hematopoietic stem/progenitor cells
Extracted molecule polyA RNA
Extraction protocol Trizol LS
Label biotin
Label protocol IVT (see manuscript)
 
Hybridization protocol The samples were applied to MouseWG-6 v1.1 Expression Beadchips and hybridized at 58C for 16-20 hours at high humidity. (See manuscript)
Scan protocol Arrays were scanned on an Illumina BeadArray Reader. (See manuscript)
Description Hematopoietic stem/progenitor cells
Data processing quantile normalization
 
Submission date Jan 23, 2009
Last update date Mar 03, 2009
Contact name Patrick Cahan
E-mail(s) patrick.cahan@jhmi.edu
Organization name Johns Hopkins University School of Medicine
Department ICE and Biomedical Engineering
Lab Cahan Lab
Street address 733 North Broadway, MRB 653
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL8081
Series (1)
GSE10656 The impact of copy number variation on local gene expression in mouse hematopoietic stem and progenitor cells

Data table header descriptions
ID_REF ID
VALUE quantile-normalized signal intensity
raw pre-normalization signal intensity

Data table
ID_REF VALUE raw
103290575 77.7333 66.8000
2120066 103.9187 87.3000
101740324 90.9895 77.2000
4050095 77.6020 66.7000
1230711 66.3791 57.9000
105860348 78.7458 67.6000
100450072 75.5750 65.1000
3610402 85.0458 72.5000
6110315 76.6958 66.0000
4280670 79.6458 68.3000
2370731 142.2333 115.7000
4200092 75.5750 65.1000
2060546 73.3208 63.3000
106200670 125.3770 103.9000
6110519 81.0645 69.4000
1690441 85.1729 72.6000
101450128 180.7270 144.1000
3190731 296.5562 230.5000
101230164 77.9812 67.0000
3870347 89.6354 76.1000

Total number of rows: 46629

Table truncated, full table size 1173 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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