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Sample GSM364000 Query DataSets for GSM364000
Status Public on Mar 09, 2009
Title BTBR_T+_tf/J B6BRT_tf_J_22-3
Sample type RNA
 
Source name B6BRT_tf_J_22-3
Organism Mus musculus
Characteristics Hematopoietic stem/progenitor cells
Extracted molecule polyA RNA
Extraction protocol Trizol LS
Label biotin
Label protocol IVT (see manuscript)
 
Hybridization protocol The samples were applied to MouseWG-6 v1.1 Expression Beadchips and hybridized at 58C for 16-20 hours at high humidity. (See manuscript)
Scan protocol Arrays were scanned on an Illumina BeadArray Reader. (See manuscript)
Description Hematopoietic stem/progenitor cells
Data processing quantile normalization
 
Submission date Jan 23, 2009
Last update date Mar 03, 2009
Contact name Patrick Cahan
E-mail(s) patrick.cahan@jhmi.edu
Organization name Johns Hopkins University School of Medicine
Department ICE and Biomedical Engineering
Lab Cahan Lab
Street address 733 North Broadway, MRB 653
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL8081
Series (1)
GSE10656 The impact of copy number variation on local gene expression in mouse hematopoietic stem and progenitor cells

Data table header descriptions
ID_REF ID
VALUE quantile-normalized signal intensity
raw pre-normalization signal intensity

Data table
ID_REF VALUE raw
103290575 79.5083 117.7000
2120066 102.8708 158.8000
101740324 98.7687 150.7000
4050095 88.2354 132.1000
1230711 74.7854 109.9000
105860348 75.5458 111.2000
100450072 80.8250 119.9000
3610402 84.8291 126.3000
6110315 76.0958 112.1000
4280670 74.9520 110.2000
2370731 120.8812 192.6000
4200092 68.6500 99.8000
2060546 72.6083 106.4000
106200670 125.5750 201.1000
6110519 76.7645 113.2000
1690441 88.7812 133.0000
101450128 192.1875 333.7000
3190731 337.6937 634.6000
101230164 74.4104 109.3000
3870347 74.7854 109.9000

Total number of rows: 46629

Table truncated, full table size 1206 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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