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Sample GSM364001 Query DataSets for GSM364001
Status Public on Mar 09, 2009
Title BTBR_T+_tf/J B6BRT_tf_J_24-5
Sample type RNA
 
Source name B6BRT_tf_J_24-5
Organism Mus musculus
Characteristics Hematopoietic stem/progenitor cells
Extracted molecule polyA RNA
Extraction protocol Trizol LS
Label biotin
Label protocol IVT (see manuscript)
 
Hybridization protocol The samples were applied to MouseWG-6 v1.1 Expression Beadchips and hybridized at 58C for 16-20 hours at high humidity. (See manuscript)
Scan protocol Arrays were scanned on an Illumina BeadArray Reader. (See manuscript)
Description Hematopoietic stem/progenitor cells
Data processing quantile normalization
 
Submission date Jan 23, 2009
Last update date Mar 03, 2009
Contact name Patrick Cahan
E-mail(s) patrick.cahan@jhmi.edu
Organization name Johns Hopkins University School of Medicine
Department ICE and Biomedical Engineering
Lab Cahan Lab
Street address 733 North Broadway, MRB 653
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL8081
Series (1)
GSE10656 The impact of copy number variation on local gene expression in mouse hematopoietic stem and progenitor cells

Data table header descriptions
ID_REF ID
VALUE quantile-normalized signal intensity
raw pre-normalization signal intensity

Data table
ID_REF VALUE raw
103290575 77.8437 111.3000
2120066 88.2375 128.4000
101740324 97.8812 143.4000
4050095 88.8687 129.5000
1230711 67.6791 95.2000
105860348 76.3083 108.7000
100450072 74.6395 106.1000
3610402 86.4541 125.5000
6110315 81.1145 116.8000
4280670 76.0833 108.4000
2370731 154.0041 223.4000
4200092 73.7416 104.7000
2060546 72.5625 102.8000
106200670 127.9229 188.5000
6110519 71.9895 101.9000
1690441 83.6958 121.0000
101450128 219.6041 318.5000
3190731 329.4354 482.7000
101230164 73.9958 105.1000
3870347 87.5062 127.2000

Total number of rows: 46629

Table truncated, full table size 1205 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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