GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM364547
Query DataSets for GSM364547
Status
Public on Jun 19, 2009
Title
human_CD133_1
Sample type
genomic
Source name
CD133+ cell
Organism
Homo sapiens
Characteristics
cell type: CD133+
Treatment protocol
Treatment protocol as described in Cui et al., 2009
Growth protocol
Growth protocol as described in Cui et al., 2009
Extracted molecule
genomic DNA
Extraction protocol
Extract protocol as described in Cui et al., 2009
Label
biotin
Label protocol
standard Affymetrix protocol
Hybridization protocol
standard Affymetrix protocol
Scan protocol
standard Affymetrix protocol
Description
none
Data processing
Affymetrix MAS5 algorithm.
Submission date
Jan 26, 2009
Last update date
Aug 28, 2018
Contact name
Chongzhi Zang
Organization name
University of Virginia
Street address
P. O. Box 800717
City
Charlottesville
State/province
VA
ZIP/Postal code
22908
Country
USA
Platform ID
GPL570
Series (1)
GSE12646
Chromatin Signatures in Multipotent Human HSCs Indicate the Fate of Bivalent Genes during Differentiation
Relations
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
VALUE
Signal
ABS_CALL
indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
970.175
P
0.000509415
AFFX-BioB-M_at
1436.41
P
4.42873e-05
AFFX-BioB-3_at
917.651
P
7.00668e-05
AFFX-BioC-5_at
3042.23
P
4.42873e-05
AFFX-BioC-3_at
3925.13
P
4.42873e-05
AFFX-BioDn-5_at
7332.65
P
4.42873e-05
AFFX-BioDn-3_at
14376.6
P
6.02111e-05
AFFX-CreX-5_at
35161.8
P
5.16732e-05
AFFX-CreX-3_at
44827.5
P
4.42873e-05
AFFX-DapX-5_at
1205.86
P
4.42873e-05
AFFX-DapX-M_at
1977.54
P
0.000972149
AFFX-DapX-3_at
2428.19
P
7.00668e-05
AFFX-LysX-5_at
144.903
P
0.00762003
AFFX-LysX-M_at
200.443
P
0.0200219
AFFX-LysX-3_at
325.251
P
0.000224668
AFFX-PheX-5_at
212.18
P
0.000509415
AFFX-PheX-M_at
236.206
P
0.0020226
AFFX-PheX-3_at
316.795
P
0.000224668
AFFX-ThrX-5_at
428.528
P
0.000169227
AFFX-ThrX-M_at
481.669
P
5.16732e-05
Total number of rows:
54675
Table truncated, full table size
1638 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM364547.CEL.gz
5.2 Mb
(ftp)
(http)
CEL
GSM364547.CHP.gz
293.3 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
