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GEO accession:
Sample GSM364548
Query DataSets for GSM364548
Status
Public on Jun 19, 2009
Title
human_CD133_2
Sample type
genomic
Source name
CD133+ cell
Organism
Homo sapiens
Characteristics
cell type: CD133+
Treatment protocol
Treatment protocol as described in Cui et al., 2009
Growth protocol
Growth protocol as described in Cui et al., 2009
Extracted molecule
genomic DNA
Extraction protocol
Extract protocol as described in Cui et al., 2009
Label
biotin
Label protocol
standard Affymetrix protocol
Hybridization protocol
standard Affymetrix protocol
Scan protocol
standard Affymetrix protocol
Description
none
Data processing
Affymetrix MAS5 algorithm.
Submission date
Jan 26, 2009
Last update date
Aug 28, 2018
Contact name
Chongzhi Zang
Organization name
University of Virginia
Street address
P. O. Box 800717
City
Charlottesville
State/province
VA
ZIP/Postal code
22908
Country
USA
Platform ID
GPL570
Series (1)
GSE12646
Chromatin Signatures in Multipotent Human HSCs Indicate the Fate of Bivalent Genes during Differentiation
Relations
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
VALUE
Signal
ABS_CALL
indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
1014.78
P
0.000258358
AFFX-BioB-M_at
1206.48
P
4.42873e-05
AFFX-BioB-3_at
913.879
P
0.000296708
AFFX-BioC-5_at
2852.25
P
4.42873e-05
AFFX-BioC-3_at
3729.82
P
4.42873e-05
AFFX-BioDn-5_at
7103.04
P
4.42873e-05
AFFX-BioDn-3_at
14197.9
P
6.02111e-05
AFFX-CreX-5_at
38372.1
P
4.42873e-05
AFFX-CreX-3_at
47235.3
P
4.42873e-05
AFFX-DapX-5_at
1498.93
P
4.42873e-05
AFFX-DapX-M_at
2546.76
P
0.000972149
AFFX-DapX-3_at
2683.42
P
5.16732e-05
AFFX-LysX-5_at
130.501
P
0.0429619
AFFX-LysX-M_at
225.825
P
0.0166701
AFFX-LysX-3_at
387.445
P
0.000509415
AFFX-PheX-5_at
317.86
P
0.000972149
AFFX-PheX-M_at
314.387
P
0.00141043
AFFX-PheX-3_at
324.338
P
0.0020226
AFFX-ThrX-5_at
600.389
P
0.000258358
AFFX-ThrX-M_at
542.358
P
4.42873e-05
Total number of rows:
54675
Table truncated, full table size
1634 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM364548.CEL.gz
5.1 Mb
(ftp)
(http)
CEL
GSM364548.CHP.gz
292.9 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
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