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Sample GSM36487 Query DataSets for GSM36487
Status Public on Apr 01, 2005
Title Nor:HIF1amut rep 1
Sample type RNA
 
Channel 1
Source name HIF1amut transfectant
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Normoxia 16hs
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 50554
Comparison of HIF1amut transfected cells with untreated cells
Array Print: Hs-OperonV2-vB1.2p10-082503
cell_line: HEK293T
 
Submission date Nov 29, 2004
Last update date May 18, 2006
Contact name Victoria Wang
E-mail(s) wangv@mail.nih.gov
Phone 301-402-3630
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2020 Differential Gene Up-regulation by HIF-1a and HIF-2a in HEK293T.

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -0.118 0.922 1 1 1 222 71 86 43 300 76 120 34 0 -0.118
1174364_1 0.164 1.121 1 1 2 2349 673 91 67 2579 653 121 47 0 0.164
1175152_1 0.190 1.141 1 1 3 1827 708 91 75 1981 613 124 45 0 0.190
1175940_1 -0.392 0.762 1 1 4 2135 476 87 48 3398 872 120 32 0 -0.392
1176716_1 0.659 1.579 1 1 5 5483 1605 89 40 4286 1094 118 36 0 0.659
1177504_1 0.566 1.480 1 1 6 7052 1428 96 233 5859 1658 126 169 0 0.566
1178580_1 0.010 1.007 1 1 7 1889 1647 93 205 2300 1940 124 153 0 0.010
1179356_1 0.582 1.497 1 1 8 649 391 82 49 581 334 119 37 0 0.582
1180144_1 -0.015 0.990 1 1 9 2986 965 85 36 3696 1222 120 32 0 -0.015
1180932_1 0.089 1.063 1 1 10 284 135 87 41 351 108 125 36 0 0.089
1181708_1 -0.024 0.984 1 1 11 491 208 79 42 631 234 120 33 0 -0.024
1182496_1 -0.082 0.945 1 1 12 131 51 76 32 185 48 114 33 0 -0.082
1183572_1 0.014 1.010 1 1 13 296 115 80 36 381 78 120 32 0 0.014
1184348_1 -0.409 0.753 1 1 14 209 70 80 36 326 92 117 32 0 -0.409
1185136_1 3.137 1 1 15 96 38 78 34 125 40 118 28 -50 1.649
1185924_1 -0.188 0.878 1 1 16 203 92 80 36 293 93 122 31 0 -0.188
1186700_1 0.168 1.123 1 1 17 1944 267 86 35 2140 312 122 32 0 0.168
1187488_1 0.205 1.153 1 1 18 838 212 84 32 916 193 118 30 0 0.205
1188564_1 -0.100 0.933 1 1 19 5427 1660 80 31 7109 1861 119 31 0 -0.100
1189340_1 -0.476 0.719 1 1 20 307 119 79 35 503 128 116 31 0 -0.476

Total number of rows: 21794

Table truncated, full table size 1449 Kbytes.




Supplementary data files not provided
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